Package org.broadinstitute.gatk.engine.arguments

Examples of org.broadinstitute.gatk.engine.arguments.ValidationExclusion

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                                                         new GenomeLocParser(header.getSequenceDictionary()),
                                                         false,
                                                         ValidationStringency.SILENT,
                                                         ReadShard.DEFAULT_MAX_READS,  // reset ReadShard.MAX_READS to ReadShard.DEFAULT_MAX_READS for each test
                                                         downsamplingMethod,
                                                         new ValidationExclusion(),
                                                         new ArrayList<ReadFilter>(),
                                                         false);

            Iterable<Shard> shardIterator = dataSource.createShardIteratorOverAllReads(new ReadShardBalancer());
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Related Classes of org.broadinstitute.gatk.engine.arguments.ValidationExclusion

  • org.broadinstitute.gatk.engine.datasources.reads.ReadShardBalancerUnitTest$ReadShardBalancerTest
  • org.broadinstitute.gatk.engine.datasources.reads.SAMDataSource
  • org.broadinstitute.gatk.engine.datasources.reads.SAMDataSourceUnitTest
  • org.broadinstitute.gatk.engine.filters.AllowNCigarMalformedReadFilterUnitTest
  • org.broadinstitute.gatk.engine.filters.MalformedReadFilter
  • org.broadinstitute.gatk.engine.filters.MalformedReadFilterUnitTest
  • org.broadinstitute.gatk.engine.filters.ReadFilterTest
  • org.broadinstitute.gatk.engine.filters.UnsafeMalformedReadFilterUnitTest
  • org.broadinstitute.gatk.engine.GenomeAnalysisEngine
  • org.broadinstitute.gatk.engine.ReadMetricsUnitTest
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