Package org.apache.uima.collection

Examples of org.apache.uima.collection.CollectionReaderDescription

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      // (found in ctakes-type-system/src/main/resources)
      TypeSystemDescriptionFactory.createTypeSystemDescription();

    AggregateBuilder aggregate = new AggregateBuilder();

    CollectionReaderDescription collectionReader = CollectionReaderFactory.createDescription(
        I2B2Challenge2010CollectionReader.class,
        typeSystemDescription,
        "inputDir",
        parentDirectory
    );
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        // use the uimafit method of finding available type system
        // descriptor via META-INF/org.uimafit/types.txt
        // (found in ctakes-type-system/src/main/resources)
      TypeSystemDescriptionFactory.createTypeSystemDescription();
   
    CollectionReaderDescription collectionReader = CollectionReaderFactory.createDescription(
        FilesInDirectoryCollectionReader.class,
        typeSystemDescription,
        "InputDirectory",
//        "/Users/m081914/work/data/sharp/Seed_Corpus/Mayo/UMLS_CEM/ss1_batch10/Knowtator/text"
        "/Users/m081914/work/sharpattr/ctakes/ctakes-assertion/sharp_data/one/Knowtator/text"
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   */
  public static void main(String[] args) {
    options.parseOptions(args);

    TypeSystemDescription typeSystemDescription;
    CollectionReaderDescription collectionReader = null;
    AnalysisEngineDescription userInput = null;
   
    try {
      typeSystemDescription = TypeSystemDescriptionFactory.createTypeSystemDescription();
     
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  private Type annotation1Type;
  private Annotation1 annotation1;
 
  @Before
  public  void setUp() throws Exception {
    CollectionReaderDescription readerDescription = (CollectionReaderDescription) UIMAFramework.getXMLParser().parseCollectionReaderDescription(new XMLInputSource(READER_DESCRIPTOR));
    reader = UIMAFramework.produceCollectionReader(readerDescription);
    cas = CasCreationUtils.createCas(reader.getProcessingResourceMetaData()).getJCas();
    cas.setDocumentText(DOCUMENT_TEXT);
    annotation1 = new Annotation1(cas);
    annotation1.setBegin(0);
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  private final static String READER_DESCRIPTOR = "src/test/resources/AnnotationTokenStreamTestDummyCollectionReader.xml";
  private CollectionReader reader;
 
  @Before
  public void setUp() throws Exception {
    CollectionReaderDescription readerDescription = (CollectionReaderDescription) UIMAFramework.getXMLParser().parseCollectionReaderDescription(new XMLInputSource(READER_DESCRIPTOR));
    reader = UIMAFramework.produceCollectionReader(readerDescription);   
  }
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          "collection_reader"+ System.getProperty("file.separator") +
          "FileSystemCollectionReader.xml";
          
         // add Collection Reader if specified
         try {
             CollectionReaderDescription collectionReaderDescription =
                     UIMAFramework.getXMLParser()
                             .parseCollectionReaderDescription(new XMLInputSource(collectionReaderDescriptor));
             collectionReaderDescription.getCollectionReaderMetaData().
               getConfigurationParameterSettings().
                 setParameterValue("InputDirectory", relativeDataPath);
             CollectionReader collectionReader = UIMAFramework
                     .produceCollectionReader(collectionReaderDescription);
             uimaAsEngine.setCollectionReader(collectionReader);     
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    if (filename == null) {
      fail("Unable to find file:" + "descriptors/collection_reader/ExtendedTestFileSystemCollectionReader.xml"
              + "in classloader");
    }
    File collectionReaderDescriptor = new File(filename);
    CollectionReaderDescription collectionReaderDescription = UIMAFramework.getXMLParser()
            .parseCollectionReaderDescription(new XMLInputSource(collectionReaderDescriptor));
    CollectionReader collectionReader = UIMAFramework
            .produceCollectionReader(collectionReaderDescription);
    eeUimaEngine.setCollectionReader(collectionReader);
    initialize(eeUimaEngine, appCtx);
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    AbstractSection.setVnsHostAndPort(aAe);
    // copy Ae into real descriptors if needed
    getTrueDescriptor();
    // use clones because validation modifies (imports get imported)
    if (isCollectionReaderDescriptor()) {
      CollectionReaderDescription collRdr = (CollectionReaderDescription) collectionReaderDescription
              .clone();
      try {
        collRdr.doFullValidation(createResourceManager());
      } catch (Throwable e) { // all these are Throwable to catch errors like
        // UnsupportedClassVersionError, which happens if the annotator
        // class is compiled for Java 5.0, but the CDE is running Java 1.4.2
        Utility
                .popMessage(
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      uimaEEEngine = new BaseUIMAAsynchronousEngine_impl();
    }

    // add Collection Reader if specified
    if (collectionReaderDescriptor != null) {
      CollectionReaderDescription collectionReaderDescription = UIMAFramework.getXMLParser()
              .parseCollectionReaderDescription(new XMLInputSource(collectionReaderDescriptor));

      CollectionReader collectionReader = UIMAFramework
              .produceCollectionReader(collectionReaderDescription);
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          "collection_reader"+ System.getProperty("file.separator") +
          "FileSystemCollectionReader.xml";
          
         // add Collection Reader if specified
         try {
             CollectionReaderDescription collectionReaderDescription =
                     UIMAFramework.getXMLParser()
                             .parseCollectionReaderDescription(new XMLInputSource(collectionReaderDescriptor));
             collectionReaderDescription.getCollectionReaderMetaData().
               getConfigurationParameterSettings().
                 setParameterValue("InputDirectory", relativeDataPath);
             CollectionReader collectionReader = UIMAFramework
                     .produceCollectionReader(collectionReaderDescription);
             uimaAsEngine.setCollectionReader(collectionReader);     
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Related Classes of org.apache.uima.collection.CollectionReaderDescription

  • org.apache.ctakes.assertion.cr.NegExCorpusReader
  • org.apache.ctakes.assertion.pipelines.GoldEntityAndAttributeReaderPipeline
  • org.apache.ctakes.assertion.pipelines.GoldEntityAndAttributeReaderPipelineForSeedCorpus
  • org.apache.ctakes.assertion.pipelines.RunJudgeAttributeInstances
  • org.apache.ctakes.relationextractor.pipelines.GoldEntityAndRelationReaderPipeline
  • org.apache.uima.application.metadata.impl.UimaApplication_Impl
  • org.apache.uima.caseditor.ui.action.ConsumerActionRunnable
  • org.apache.uima.collection.impl.CollectionReaderDescription_implTest
  • org.apache.uima.collection.impl.cpm.utils.DescriptorMakeUtil
  • org.apache.uima.cpe.model.CpeDescriptorModel
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