Package org.apache.uima.collection

Examples of org.apache.uima.collection.CollectionReaderDescription

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        // Add Collection Reader
        String aCollectionReaderPath = "";
        List list = getUimaCollectionReaders();
        CpeCollectionReader cr = null;
        if (list != null && list.size() > 0) {
            CollectionReaderDescription crDescr
                = (CollectionReaderDescription) ((UimaCollectionReader) list.get(0)).getXmlizable();
            if (crDescr != null) {
                tp = crDescr.getCollectionReaderMetaData().getTypePriorities();
                if (tp != null) {
                    typePrioritiesList.add(tp);
                }
//            } else {
//                Trace.bug("CR doesn't have XMLizable");
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    AbstractSection.setVnsHostAndPort(aAe);
    // copy Ae into real descriptors if needed
    getTrueDescriptor();
    // use clones because validation modifies (imports get imported)
    if (isCollectionReaderDescriptor()) {
      CollectionReaderDescription collRdr = (CollectionReaderDescription) collectionReaderDescription
              .clone();
      try {
        collRdr.doFullValidation(createResourceManager());
      } catch (Throwable e) { // all these are Throwable to catch errors like
        // UnsupportedClassVersionError, which happens if the annotator
        // class is compiled for Java 5.0, but the CDE is running Java 1.4.2
        Utility
                .popMessage(
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      if ( filename == null )
      {
        fail("Unable to find file:"+"descriptors/collection_reader/FileSystemCollectionReader.xml"+ "in classloader");
      }
      File collectionReaderDescriptor = new File(filename);
      CollectionReaderDescription collectionReaderDescription = UIMAFramework.getXMLParser()
        .parseCollectionReaderDescription(new XMLInputSource(collectionReaderDescriptor));
      CollectionReader collectionReader = UIMAFramework
        .produceCollectionReader(collectionReaderDescription);
      eeUimaEngine.setCollectionReader(collectionReader);
      initialize(eeUimaEngine, appCtx);
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    AbstractSection.setVnsHostAndPort(aAe);
    // copy Ae into real descriptors if needed
    getTrueDescriptor();
    // use clones because validation modifies (imports get imported)
    if (isCollectionReaderDescriptor()) {
      CollectionReaderDescription collRdr = (CollectionReaderDescription) collectionReaderDescription
              .clone();
      try {
        collRdr.doFullValidation(createResourceManager());
      } catch (Throwable e) { // all these are Throwable to catch errors like
        // UnsupportedClassVersionError, which happens if the annotator
        // class is compiled for Java 5.0, but the CDE is running Java 1.4.2
        Utility
                .popMessage(
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    }

   
    //CollectionReader negexReader = new NegExCorpusReader(false);
    //List<NegExAnnotation> list = readAndParseAllLines(filename);
    CollectionReaderDescription collectionReader = CollectionReaderFactory.createDescription(
        NegExCorpusReader.class,
        typeSystemDescription
    );

    //TypeSystemDescription typeSystemDescription = AssertionComponents.TYPE_SYSTEM_DESCRIPTION; // TypeSystemDescriptionFactory.createTypeSystemDescriptionFromPath();//.createTypeSystemDescription();
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          // (found in ctakes-type-system/src/main/resources)
        TypeSystemDescriptionFactory.createTypeSystemDescription();
     
      AggregateBuilder aggregate = new AggregateBuilder();
     
      CollectionReaderDescription collectionReader = CollectionReaderFactory.createDescription(
          FilesInDirectoryCollectionReader.class,
          typeSystemDescription,
          "InputDirectory",
          textDirectory.toString()
          );
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      // (found in ctakes-type-system/src/main/resources)
      TypeSystemDescriptionFactory.createTypeSystemDescription();

    AggregateBuilder aggregate = new AggregateBuilder();

    CollectionReaderDescription collectionReader = CollectionReaderFactory.createDescription(
        I2B2Challenge2010CollectionReader.class,
        typeSystemDescription,
        "inputDir",
        parentDirectory
    );
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      TypeSystemDescriptionFactory.createTypeSystemDescription();

    AggregateBuilder aggregate = new AggregateBuilder();

    // input dir is hard-coded in AssertionConst
    CollectionReaderDescription collectionReader = CollectionReaderFactory.createDescription(
        NegExCorpusReader.class,
        typeSystemDescription
    );

    // fill in other values that are necessary for preprocessing
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    splitMipacq.put(new File(inputDirectory+"/text/test"),  testDirectory);
    splitMipacq.put(new File(inputDirectory+"/text/dev"),   devDirectory);
    for (File inDir : splitMipacq.keySet() ) {
      AggregateBuilder aggregate = new AggregateBuilder();

      CollectionReaderDescription collectionReader = CollectionReaderFactory.createDescription(
          FilesInDirectoryCollectionReader.class,
          typeSystemDescription,
          "InputDirectory",
          inDir
          );
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          // (found in ctakes-type-system/src/main/resources)
        TypeSystemDescriptionFactory.createTypeSystemDescription();
     
      AggregateBuilder aggregate = new AggregateBuilder();
     
      CollectionReaderDescription collectionReader = CollectionReaderFactory.createDescription(
          FilesInDirectoryCollectionReader.class,
          typeSystemDescription,
          "InputDirectory",
          textDirectory.toString()
          );
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Related Classes of org.apache.uima.collection.CollectionReaderDescription

  • org.apache.ctakes.assertion.cr.NegExCorpusReader
  • org.apache.ctakes.assertion.pipelines.GoldEntityAndAttributeReaderPipeline
  • org.apache.ctakes.assertion.pipelines.GoldEntityAndAttributeReaderPipelineForSeedCorpus
  • org.apache.ctakes.assertion.pipelines.RunJudgeAttributeInstances
  • org.apache.ctakes.relationextractor.pipelines.GoldEntityAndRelationReaderPipeline
  • org.apache.uima.application.metadata.impl.UimaApplication_Impl
  • org.apache.uima.caseditor.ui.action.ConsumerActionRunnable
  • org.apache.uima.collection.impl.CollectionReaderDescription_implTest
  • org.apache.uima.collection.impl.cpm.utils.DescriptorMakeUtil
  • org.apache.uima.cpe.model.CpeDescriptorModel
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