Package org.apache.commons.math3.distribution

Examples of org.apache.commons.math3.distribution.NormalDistribution

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    @Test
    public void testRandomDataNormalDistribution() {
        for (int run = 0; run < 100; run++) {
            Random r = new Random(System.currentTimeMillis());
            NormalDistribution dist = new NormalDistribution(0.0, r.nextDouble() * 5);

            // matrix size
            int size = r.nextInt(20) + 4;

            double[][] data = new double[size][size];
            for (int i = 0; i < size; i++) {
                for (int j = 0; j < size; j++) {
                    data[i][j] = dist.sample();
                }
            }

            RealMatrix m = MatrixUtils.createRealMatrix(data);
            RealMatrix s = checkAEqualPTPt(m);
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                                      double xSigma,
                                      double ySigma,
                                      long seed) {
        final RandomGenerator rng = new Well44497b(seed);
        this.radius = radius;
        cX = new NormalDistribution(rng, x, xSigma,
                                    NormalDistribution.DEFAULT_INVERSE_ABSOLUTE_ACCURACY);
        cY = new NormalDistribution(rng, y, ySigma,
                                    NormalDistribution.DEFAULT_INVERSE_ABSOLUTE_ACCURACY);
        tP = new UniformRealDistribution(rng, 0, MathUtils.TWO_PI,
                                         UniformRealDistribution.DEFAULT_INVERSE_ABSOLUTE_ACCURACY);
    }
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                                            double hi,
                                            long seed) {
        final RandomGenerator rng = new Well44497b(seed);
        slope = a;
        intercept = b;
        error = new NormalDistribution(rng, 0, sigma,
                                       NormalDistribution.DEFAULT_INVERSE_ABSOLUTE_ACCURACY);
        x = new UniformRealDistribution(rng, lo, hi,
                                        UniformRealDistribution.DEFAULT_INVERSE_ABSOLUTE_ACCURACY);
    }
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    @Test
    @Ignore
    public void testNormalDistributionUnsymmetricMatrix() {
        for (int run = 0; run < 100; run++) {
            Random r = new Random(System.currentTimeMillis());
            NormalDistribution dist = new NormalDistribution(0.0, r.nextDouble() * 5);

            // matrix size
            int size = r.nextInt(20) + 4;

            double[][] data = new double[size][size];
            for (int i = 0; i < size; i++) {
                for (int j = 0; j < size; j++) {
                    data[i][j] = dist.sample();
                }
            }

            RealMatrix m = MatrixUtils.createRealMatrix(data);
            checkUnsymmetricMatrix(m);
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                                      double xSigma,
                                      double ySigma,
                                      long seed) {
        final RandomGenerator rng = new Well44497b(seed);
        this.radius = radius;
        cX = new NormalDistribution(rng, x, xSigma,
                                    NormalDistribution.DEFAULT_INVERSE_ABSOLUTE_ACCURACY);
        cY = new NormalDistribution(rng, y, ySigma,
                                    NormalDistribution.DEFAULT_INVERSE_ABSOLUTE_ACCURACY);
        tP = new UniformRealDistribution(rng, 0, MathUtils.TWO_PI,
                                         UniformRealDistribution.DEFAULT_INVERSE_ABSOLUTE_ACCURACY);
    }
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     * The first bin includes its lower bound, 0, so has different mean and
     * standard deviation.
     */
    private RealDistribution findKernel(double lower, double upper) {
        if (lower < 1) {
            return new NormalDistribution(5d, 3.3166247903554);
        } else {
            return new NormalDistribution((upper + lower + 1) / 2d, 3.0276503540974917);
        }
    }
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                                            double hi,
                                            long seed) {
        final RandomGenerator rng = new Well44497b(seed);
        slope = a;
        intercept = b;
        error = new NormalDistribution(rng, 0, sigma,
                                       NormalDistribution.DEFAULT_INVERSE_ABSOLUTE_ACCURACY);
        x = new UniformRealDistribution(rng, lo, hi,
                                        UniformRealDistribution.DEFAULT_INVERSE_ABSOLUTE_ACCURACY);
    }
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        }

        // Fill values array with random data from N(mu, sigma)
        // and fill valuesList with values from values array with
        // values[i] repeated weights[i] times, each i
        final RealDistribution valueDist = new NormalDistribution(mu, sigma);
        List<Double> valuesList = new ArrayList<Double>();
        for (int i = 0; i < len; i++) {
            double value = valueDist.sample();
            values[i] = value;
            for (int j = 0; j < intWeights[i]; j++) {
                valuesList.add(new Double(value));
            }
        }
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   * @param sd
   *          a double standard deviation
   * @return a double sample
   */
  public static double rNorm(double mean, double sd) {
    RealDistribution dist = new NormalDistribution(RANDOM.getRandomGenerator(),
                                                   mean,
                                                   sd,
                                                   NormalDistribution.DEFAULT_INVERSE_ABSOLUTE_ACCURACY);
    return dist.sample();
  }
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        final Multiset<String> k2 = HashMultiset.create();
        for (int i = 0; i < 50000; i++) {
            k2.add(x2.sample());
        }

        final NormalDistribution normal = new NormalDistribution();
        List<Double> scores = Ordering.natural().sortedCopy(Iterables.transform(k1.elementSet(),
                new Function<String, Double>() {
                    public Double apply(String s) {
                        return normal.cumulativeProbability(LogLikelihood.rootLogLikelihoodRatio(k1.count(s), 50000 - k1.count(s), k2.count(s), 50000 - k2.count(s)));
                    }
                }));
        int n = scores.size();
//        System.out.printf("%.5f, %.5f, %.5f, %.5f, %.5f, %.5f, %.5f", scores.get(0), scores.get((int) (0.05*n)), scores.get(n / 4), scores.get(n / 2), scores.get(3 * n / 4), scores.get((int) (0.95 * n)), scores.get(n - 1));
        int i = 0;
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