Package org.apache.airavata.workflow.model.graph.system

Examples of org.apache.airavata.workflow.model.graph.system.InputNode

273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
        final List<InputNode> inputNodes = GraphUtil.getInputNodes(this.workflow.getGraph());
        builder.newFragment("inputs");
        new ODEClient();
        for (int i = 0; i < inputNodes.size(); i++) {
            InputNode inputNode = inputNodes.get(i);
            XBayaTextField parameterTextField = this.parameterTextFields.get(i);
            inputNode.getID();
            String value = parameterTextField.getText();
            inputNode.setDefaultValue(value);
        }

        final String workflowInterpreterUrl = this.workflowInterpreterTextField.getText();
        if (null != workflowInterpreterUrl && !"".equals(workflowInterpreterUrl)) {
            try {
                this.engine.getConfiguration().setWorkflowInterpreterURL(new URI(workflowInterpreterUrl));
            } catch (URISyntaxException e) {
                this.engine.getGUI().getErrorWindow().error(e);
            }
        }

        final String gFacUrl = this.gfacTextField.getText();
        if (null != gFacUrl && !"".equals(gFacUrl)) {
            try {
                this.engine.getConfiguration().setGFacURL(new URI(gFacUrl));
            } catch (URISyntaxException e) {
                this.engine.getGUI().getErrorWindow().error(e);
            }
        }
        this.engine.getConfiguration().setTopic(topic);

        new Thread() {
            @Override
            public void run() {

                try {
                    List<WorkflowInput> workflowInputs=new ArrayList<WorkflowInput>();
                    for (int i = 0; i < inputNodes.size(); i++) {
                      InputNode inputNode = inputNodes.get(i);
                      workflowInputs.add(new WorkflowInput(inputNode.getID(), inputNode.getDefaultValue().toString()));
                    }
                    AiravataAPI api = engine.getConfiguration().getAiravataAPI();
                   
                    ExperimentAdvanceOptions options = api.getExecutionManager().createExperimentAdvanceOptions(instanceNameFinal, api.getCurrentUser(), null);
                    if (AmazonCredential.getInstance().getAwsAccessKeyId() != null) {
View Full Code Here
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
        final List<InputNode> inputNodes = GraphUtil.getInputNodes(this.workflow.getGraph());
        builder.newFragment("inputs");
        new ODEClient();
        for (int i = 0; i < inputNodes.size(); i++) {
            InputNode inputNode = inputNodes.get(i);
            XBayaTextField parameterTextField = this.parameterTextFields.get(i);
            inputNode.getID();
            String value = parameterTextField.getText();
            inputNode.setDefaultValue(value);
        }

//        final String gFacUrl = ((URI) this.gfacUrlListField.getSelectedItem()).toASCIIString();
//        if (null != gFacUrl && !"".equals(gFacUrl)) {
//            try {
View Full Code Here
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
        }

        // Create input fields
        List<InputNode> inputNodes = GraphUtil.getInputNodes(this.workflow.getGraph());
        for (Iterator<InputNode> iterator = inputNodes.iterator(); iterator.hasNext();) {
            InputNode node = iterator.next();
            String id = node.getID();
            QName parameterType = node.getParameterType();

            /*
             * If input node has no connection, skip it
             */
            if (parameterType == null) {
                iterator.remove();
                continue;
            }

            JLabel nameLabel = new JLabel(id);
            JLabel typeField = new JLabel(parameterType.getLocalPart());
            XBayaTextField paramField = new XBayaTextField();
            Object value = node.getDefaultValue();

            String valueString;
            if (value == null) {
                valueString = "";
            } else {
                if (value instanceof XmlElement) {
                    XmlElement valueElement = (XmlElement) value;
                    valueString = XMLUtil.xmlElementToString(valueElement);
                } else {
                    // Only string comes here for now.
                    valueString = value.toString();
                }
            }

            if (!node.isVisibility()) {
                paramField.setEditable(false);
            }
            paramField.setText(valueString);
            this.parameterPanel.add(nameLabel);
            this.parameterPanel.add(typeField);
View Full Code Here
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
        }

        // Create input fields
        List<InputNode> inputNodes = GraphUtil.getInputNodes(this.workflow.getGraph());
        for (Iterator<InputNode> iterator = inputNodes.iterator(); iterator.hasNext();) {
            InputNode node = iterator.next();
            String id = node.getID();
            QName parameterType = node.getParameterType();

            /*
             * If input node has no connection, skip it
             */
            if (parameterType == null) {
                iterator.remove();
                continue;
            }

            JLabel nameLabel = new JLabel(id);
            JLabel typeField = new JLabel(parameterType.getLocalPart());
            XBayaTextField paramField = new XBayaTextField();
            Object value = node.getDefaultValue();

            String valueString;
            if (value == null) {
                valueString = "";
            } else {
                if (value instanceof XmlElement) {
                    XmlElement valueElement = (XmlElement) value;
                    valueString = XMLUtil.xmlElementToString(valueElement);
                } else {
                    // Only string comes here for now.
                    valueString = value.toString();
                }
            }

            if (!node.isVisibility()) {
                paramField.setEditable(false);
            }
            paramField.setText(valueString);
            this.parameterPanel.add(nameLabel);
            this.parameterPanel.add(typeField);
View Full Code Here
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
        final List<InputNode> inputNodes = GraphUtil.getInputNodes(this.workflow.getGraph());
        builder.newFragment("inputs");
        new ODEClient();
        for (int i = 0; i < inputNodes.size(); i++) {
            InputNode inputNode = inputNodes.get(i);
            XBayaTextField parameterTextField = this.parameterTextFields.get(i);
            inputNode.getID();
            String value = parameterTextField.getText();
            inputNode.setDefaultValue(value);
        }

        final String gFacUrl = ((URI) this.gfacUrlListField.getSelectedItem()).toASCIIString();
        if (null != gFacUrl && !"".equals(gFacUrl)) {
            try {
View Full Code Here
382
383
384
385
386
387
388
389
390
391
392
393
        //
        // Add default value if it's input.
        //
        if (node instanceof InputNode) {
            InputNode inputNode = (InputNode) node;
            Object value = inputNode.getDefaultValue();
            if (value instanceof String) {
                element.setAttributeValue(WSConstants.DEFAULT_ATTRIBUTE, (String) value);
            } else if (value instanceof XmlElement) {
                // Add the default value in <annotation><default> because there
                // is no standard way.
View Full Code Here
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
        final List<InputNode> inputNodes = GraphUtil.getInputNodes(this.workflow.getGraph());
        builder.newFragment("inputs");
        new ODEClient();
        for (int i = 0; i < inputNodes.size(); i++) {
            InputNode inputNode = inputNodes.get(i);
            XBayaTextField parameterTextField = this.parameterTextFields.get(i);
            inputNode.getID();
            String value = parameterTextField.getText();
            inputNode.setDefaultValue(value);
        }

        final String workflowInterpreterUrl = this.workflowInterpreterTextField.getText();
        if (null != workflowInterpreterUrl && !"".equals(workflowInterpreterUrl)) {
            try {
                this.engine.getConfiguration().setWorkflowInterpreterURL(new URI(workflowInterpreterUrl));
            } catch (URISyntaxException e) {
                this.engine.getGUI().getErrorWindow().error(e);
            }
        }

        final String gFacUrl = this.gfacTextField.getText();
        if (null != gFacUrl && !"".equals(gFacUrl)) {
            try {
                this.engine.getConfiguration().setGFacURL(new URI(gFacUrl));
            } catch (URISyntaxException e) {
                this.engine.getGUI().getErrorWindow().error(e);
            }
        }
        this.engine.getConfiguration().setTopic(topic);

        new Thread() {
            @Override
            public void run() {

                try {
                    List<WorkflowInput> workflowInputs=new ArrayList<WorkflowInput>();
                    for (int i = 0; i < inputNodes.size(); i++) {
                      InputNode inputNode = inputNodes.get(i);
                      workflowInputs.add(new WorkflowInput(inputNode.getID(), inputNode.getDefaultValue().toString()));
                    }
                    AiravataAPI api = engine.getConfiguration().getAiravataAPI();
                   
                    ExperimentAdvanceOptions options = api.getExecutionManager().createExperimentAdvanceOptions(instanceNameFinal, api.getCurrentUser(), null);
                    String experimentId = api.getExecutionManager().runExperiment(api.getWorkflowManager().getWorkflowAsString(workflow), workflowInputs,options);
View Full Code Here
137
138
139
140
141
142
143
144
145
146
147
    } else if (GraphSchema.NODE_TYPE_STREAM_SOURCE.equals(type)) {
      node = new StreamSourceNode(nodeElement);
    } else if (GraphSchema.NODE_TYPE_WORKFLOW.equals(type)) {
      node = new WorkflowNode(nodeElement);
    } else if (GraphSchema.NODE_TYPE_INPUT.equals(type)) {
      node = new InputNode(nodeElement);
    } else if (GraphSchema.NODE_TYPE_OUTPUT.equals(type)) {
      node = new OutputNode(nodeElement);
    } else if (GraphSchema.NODE_TYPE_CONSTANT.equals(type)) {
      node = new ConstantNode(nodeElement);
    } else if (GraphSchema.NODE_TYPE_SPLIT.equals(type)) {
View Full Code Here
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
      if (null == inputVal) {
        throw new WorkFlowInterpreterException("Unable to find inputs for the subworkflow node node:" + node.getID());
      }

      for (Iterator<Node> iterator = subWorkflowInputNodes.iterator(); iterator.hasNext();) {
        InputNode inputNode = (InputNode) iterator.next();
        if (inputNode.getName().equals(port.getName())) {
          inputNode.setDefaultValue(inputVal);
        }
      }
    }
    for (Iterator<Node> iterator = subWorkflowInputNodes.iterator(); iterator.hasNext();) {
      InputNode inputNode = (InputNode) iterator.next();
      if (inputNode.getDefaultValue() == null) {
        throw new WorkFlowInterpreterException("Input not set for  :" + inputNode.getID());
      }

    }

    try {
View Full Code Here
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
    /**
     * @see org.apache.airavata.workflow.model.component.Component#createNode(org.apache.airavata.workflow.model.graph.Graph)
     */
    @Override
    public InputNode createNode(Graph graph) {
        InputNode node = new InputNode(graph);
        node.setName(NAME);
        node.setComponent(this);

        // Creates a unique ID for the node. This has to be after setName().
        node.createID();

        // Creates a output port
        createPorts(node);

        return node;
View Full Code Here
TOP

Related Classes of org.apache.airavata.workflow.model.graph.system.InputNode

  • org.apache.airavata.workflow.model.component.Component
  • org.apache.airavata.workflow.model.component.system.InputComponent
  • org.apache.airavata.workflow.model.component.ws.WSComponentPort
  • org.apache.airavata.workflow.model.gpel.script.WorkflowWSDL
  • org.apache.airavata.workflow.model.graph.DataEdge
  • org.apache.airavata.workflow.model.graph.DataPort
  • org.apache.airavata.workflow.model.graph.Edge
  • org.apache.airavata.workflow.model.graph.Port
  • org.apache.airavata.workflow.model.graph.ws.WSGraphFactory
  • org.apache.airavata.workflow.model.graph.ws.WSPort
    • Copyright © 2018 www.massapicom. All rights reserved.
    All source code are property of their respective owners. Java is a trademark of Sun Microsystems, Inc and owned by ORACLE Inc. Contact coftware#gmail.com.