Package org.apache.airavata.workflow.model.graph.system

Examples of org.apache.airavata.workflow.model.graph.system.InputNode


        Node multiNode = workflow.addNode(multiComp);
        multiNode.setPosition(new Point(320, 130));

        // Parameter node 1
        InputNode paramNode1 = (InputNode) workflow.addNode(this.inputComponent);
        paramNode1.setPosition(new Point(20, 30));
        String paramValue1 = "2";
        paramNode1.setDefaultValue(paramValue1);

        // Parameter node 2
        InputNode paramNode2 = (InputNode) workflow.addNode(this.inputComponent);
        paramNode2.setPosition(new Point(20, 100));
        String paramValue2 = "3";
        paramNode2.setDefaultValue(paramValue2);

        // Parameter node 3
        InputNode paramNode3 = (InputNode) workflow.addNode(this.inputComponent);
        paramNode3.setPosition(new Point(20, 170));
        String paramValue3 = "4";
        paramNode3.setDefaultValue(paramValue3);

        // Parameter node 4
        InputNode paramNode4 = (InputNode) workflow.addNode(this.inputComponent);
        paramNode4.setPosition(new Point(20, 240));
        String paramValue4 = "5";
        paramNode4.setDefaultValue(paramValue4);

        OutputNode outParamNode = (OutputNode) workflow.addNode(this.outputComponent);
        outParamNode.setPosition(new Point(370, 240));

        // Connect ports
        graph.addEdge(paramNode1.getOutputPort(0), adderNode1.getInputPort(0));
        graph.addEdge(paramNode2.getOutputPort(0), adderNode1.getInputPort(1));
        graph.addEdge(paramNode3.getOutputPort(0), adderNode2.getInputPort(0));
        graph.addEdge(paramNode4.getOutputPort(0), adderNode2.getInputPort(1));
        graph.addEdge(adderNode1.getOutputPort(0), multiNode.getInputPort(0));
        graph.addEdge(adderNode2.getOutputPort(0), multiNode.getInputPort(1));
        graph.addEdge(multiNode.getOutputPort(0), outParamNode.getInputPort(0));

        return workflow;
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      if (null == inputVal) {
        throw new WorkFlowInterpreterException("Unable to find inputs for the subworkflow node node:" + node.getID());
      }

      for (Iterator<Node> iterator = subWorkflowInputNodes.iterator(); iterator.hasNext();) {
        InputNode inputNode = (InputNode) iterator.next();
        if (inputNode.getName().equals(port.getName())) {
          inputNode.setDefaultValue(inputVal);
        }
      }
    }
    for (Iterator<Node> iterator = subWorkflowInputNodes.iterator(); iterator.hasNext();) {
      InputNode inputNode = (InputNode) iterator.next();
      if (inputNode.getDefaultValue() == null) {
        throw new WorkFlowInterpreterException("Input not set for  :" + inputNode.getID());
      }

    }

    try {
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        // TODO error check for user inputs

        List<InputNode> inputNodes = GraphUtil.getInputNodes(this.workflow.getGraph());
        final org.xmlpull.v1.builder.XmlElement inputs = builder.newFragment("inputs");
        for (int i = 0; i < inputNodes.size(); i++) {
            InputNode inputNode = inputNodes.get(i);
            XBayaTextField parameterTextField = this.parameterTextFields.get(i);
            String id = inputNode.getID();
            String value = parameterTextField.getText();
            org.xmlpull.v1.builder.XmlElement input = inputs.addElement(id);
            input.addChild(value);
        }
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        final List<InputNode> inputNodes = GraphUtil.getInputNodes(this.workflow.getGraph());
        builder.newFragment("inputs");
        new ODEClient();
        for (int i = 0; i < inputNodes.size(); i++) {
            InputNode inputNode = inputNodes.get(i);
            XBayaTextField parameterTextField = this.parameterTextFields.get(i);
            inputNode.getID();
            String value = parameterTextField.getText();
            inputNode.setDefaultValue(value);
        }

//        final String workflowInterpreterUrl = this.workflowInterpreterTextField.getText();
//        if (null != workflowInterpreterUrl && !"".equals(workflowInterpreterUrl)) {
//            try {
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        // TODO error check for user inputs

        List<InputNode> inputNodes = GraphUtil.getInputNodes(this.workflow.getGraph());
        for (int i = 0; i < inputNodes.size(); i++) {
            InputNode inputNode = inputNodes.get(i);
            XBayaTextField parameterTextField = this.parameterTextFields.get(i);
            String id = inputNode.getID();
            String value = parameterTextField.getText();
            arguments.add("-" + id);
            arguments.add(value);
        }
View Full Code Here

        }

        // Create input fields
        List<InputNode> inputNodes = GraphUtil.getInputNodes(this.workflow.getGraph());
        for (Iterator<InputNode> iterator = inputNodes.iterator(); iterator.hasNext();) {
            InputNode node = iterator.next();
            String id = node.getID();
            QName parameterType = node.getParameterType();

            /*
             * If input node has no connection, skip it
             */
            if (parameterType == null) {
                iterator.remove();
                continue;
            }

            JLabel nameLabel = new JLabel(id);
            JLabel typeField = new JLabel(parameterType.getLocalPart());
            XBayaTextField paramField = new XBayaTextField();
            Object value = node.getDefaultValue();

            String valueString;
            if (value == null) {
                valueString = "";
            } else {
                if (value instanceof XmlElement) {
                    XmlElement valueElement = (XmlElement) value;
                    valueString = XMLUtil.xmlElementToString(valueElement);
                } else {
                    // Only string comes here for now.
                    valueString = value.toString();
                }
            }

            if (!node.isVisibility()) {
                paramField.setEditable(false);
            }
            paramField.setText(valueString);
            this.parameterPanel.add(nameLabel);
            this.parameterPanel.add(typeField);
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        final List<InputNode> inputNodes = GraphUtil.getInputNodes(this.workflow.getGraph());
        builder.newFragment("inputs");
        new ODEClient();
        for (int i = 0; i < inputNodes.size(); i++) {
            InputNode inputNode = inputNodes.get(i);
            XBayaTextField parameterTextField = this.parameterTextFields.get(i);
            inputNode.getID();
            String value = parameterTextField.getText();
            inputNode.setDefaultValue(value);
        }

        // final String xregistryUrl = this.xRegistryTextField.getText();
        // if (null != xregistryUrl && !"".equals(xregistryUrl)) {
        // try {
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        // TODO error check for user inputs

        List<InputNode> inputNodes = GraphUtil.getInputNodes(this.workflow.getGraph());
        for (int i = 0; i < inputNodes.size(); i++) {
            InputNode inputNode = inputNodes.get(i);
            XBayaTextField parameterTextField = this.parameterTextFields.get(i);
            String id = inputNode.getID();
            String value = parameterTextField.getText();
            arguments.add("-" + id);
            arguments.add(value);
        }
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        final List<InputNode> inputNodes = GraphUtil.getInputNodes(this.workflow.getGraph());
        builder.newFragment("inputs");
        new ODEClient();
        for (int i = 0; i < inputNodes.size(); i++) {
            InputNode inputNode = inputNodes.get(i);
            XBayaTextField parameterTextField = this.parameterTextFields.get(i);
            inputNode.getID();
            String value = parameterTextField.getText();
            inputNode.setDefaultValue(value);
        }

        final String workflowInterpreterUrl = this.workflowInterpreterTextField.getText();
        if (null != workflowInterpreterUrl && !"".equals(workflowInterpreterUrl)) {
            try {
                this.engine.getConfiguration().setWorkflowInterpreterURL(new URI(workflowInterpreterUrl));
            } catch (URISyntaxException e) {
                this.engine.getGUI().getErrorWindow().error(e);
            }
        }

        final String gFacUrl = this.gfacTextField.getText();
        if (null != gFacUrl && !"".equals(gFacUrl)) {
            try {
                this.engine.getConfiguration().setGFacURL(new URI(gFacUrl));
            } catch (URISyntaxException e) {
                this.engine.getGUI().getErrorWindow().error(e);
            }
        }
        this.engine.getConfiguration().setTopic(topic);

        final String topicString = topic;
        new Thread() {
            /**
             * @see java.lang.Thread#run()
             */
            @Override
            public void run() {

                try {
                    WorkflowInterpreterLaunchWindow.this.engine.getMonitor().getConfiguration().setTopic(topicString);

                    WorkflowInterpreterLaunchWindow.this.engine.getMonitor().start();
                } catch (MonitorException e1) {
                    WorkflowInterpreterLaunchWindow.this.engine.getGUI().getErrorWindow().error(e1);
                }
                try {

                    WorkflowInterpretorStub stub = new WorkflowInterpretorStub(engine.getConfiguration()
                            .getWorkflowInterpreterURL().toString());
                    NameValue[] configurations = new NameValue[6];
                    configurations[0] = new NameValue();
                    configurations[0].setName(HeaderConstants.HEADER_ELEMENT_GFAC);
                    configurations[0].setValue(engine.getConfiguration().getGFacURL().toString());
                    configurations[1] = new NameValue();
                    configurations[1].setName(HeaderConstants.HEADER_ELEMENT_REGISTRY);
                    if (null == engine.getConfiguration().getRegistryURL()) {
                        configurations[1].setValue(XBayaConstants.REGISTRY_URL.toString());
                    } else {
                        configurations[1].setValue(engine.getConfiguration().getRegistryURL().toString());
                    }
                    configurations[2] = new NameValue();
                    configurations[2].setName(HeaderConstants.HEADER_ELEMENT_PROXYSERVER);
                    configurations[2].setValue(engine.getConfiguration().getMyProxyServer());

                    configurations[3] = new NameValue();
                    configurations[3].setName(HeaderConstants.HEADER_ELEMENT_BROKER);
                    configurations[3].setValue(engine.getConfiguration().getBrokerURL().toString());

                    configurations[4] = new NameValue();
                    configurations[4].setName(HeaderConstants.HEADER_ELEMENT_MSGBOX);
                    configurations[4].setValue(engine.getConfiguration().getMessageBoxURL().toString());

                    configurations[5] = new NameValue();
                    configurations[5].setName(HeaderConstants.HEADER_ELEMENT_DSC);
                    configurations[5].setValue(engine.getConfiguration().getDSCURL().toString());

                    NameValue[] inputNameVals = new NameValue[inputNodes.size()];
                    for (int i = 0; i < inputNodes.size(); i++) {
                        inputNameVals[i] = new NameValue();
                        InputNode inputNode = inputNodes.get(i);
                        String id = inputNode.getID();
                        String value = inputNode.getDefaultValue().toString();
                        inputNameVals[i].setName(id);
                        inputNameVals[i].setValue(value);
                    }
                    XBayaConfiguration configuration = engine.getConfiguration();
                    String myProxyUsername = configuration.getRegistryUserName();
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        // Parameters
        Component inputComponent = new InputComponent();
        Component outputComponent = new OutputComponent();

        // Input parameter node
        InputNode confInput = (InputNode) workflow.addNode(inputComponent);
        confInput.setPosition(new Point(0, 100));

        // Input parameter node
        InputNode adasInput = (InputNode) workflow.addNode(inputComponent);
        adasInput.setPosition(new Point(286, 145));

        // Input parameter node
        InputNode namInput = (InputNode) workflow.addNode(inputComponent);
        namInput.setPosition(new Point(179, 438));

        // Output parameter
        OutputNode outParamNode = (OutputNode) workflow.addNode(outputComponent);
        outParamNode.setPosition(new Point(863, 169));

        // Connect ports
        graph.addEdge(confInput.getOutputPort(0), wrfPreNode.getInputPort(0));
        graph.addEdge(confInput.getOutputPort(0), arp2wrfNode.getInputPort(0));
        graph.addEdge(confInput.getOutputPort(0), adasIntNode.getInputPort(1));
        graph.addEdge(confInput.getOutputPort(0), lateralIntNode.getInputPort(1));
        graph.addEdge(confInput.getOutputPort(0), terrainPreNode.getInputPort(0));
        graph.addEdge(terrainPreNode.getOutputPort(0), adasIntNode.getInputPort(2));
        graph.addEdge(terrainPreNode.getOutputPort(0), lateralIntNode.getInputPort(0));
        graph.addEdge(adasInput.getOutputPort(0), adasIntNode.getInputPort(0));
        graph.addEdge(namInput.getOutputPort(0), lateralIntNode.getInputPort(2));
        graph.addEdge(wrfPreNode.getOutputPort(0), arp2wrfNode.getInputPort(1));
        graph.addEdge(adasIntNode.getOutputPort(0), arp2wrfNode.getInputPort(2));
        graph.addEdge(lateralIntNode.getOutputPort(0), arp2wrfNode.getInputPort(3));
        graph.addEdge(arp2wrfNode.getOutputPort(0), wrfNode.getInputPort(0));
        graph.addEdge(wrfNode.getOutputPort(0), outParamNode.getInputPort(0));
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