Package no.uib.jsparklines.renderers

Examples of no.uib.jsparklines.renderers.JSparklinesBarChartTableCellRenderer

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                        + "Please contact the <a href=\"http://groups.google.com/group/peptide-shaker\">PeptideShaker developers</a>."),
                        "PRIDE Access Error", JOptionPane.WARNING_MESSAGE);
            }

            // update the sparklines with the max values
            assaysTable.getColumn("#Proteins").setCellRenderer(new JSparklinesBarChartTableCellRenderer(PlotOrientation.HORIZONTAL, maxNumProteins, peptideShakerGUI.getSparklineColor()));
            ((JSparklinesBarChartTableCellRenderer) assaysTable.getColumn("#Proteins").getCellRenderer()).showNumberAndChart(true, TableProperties.getLabelWidth());
            ((JSparklinesBarChartTableCellRenderer) assaysTable.getColumn("#Proteins").getCellRenderer()).setLogScale(true);
            ((JSparklinesBarChartTableCellRenderer) assaysTable.getColumn("#Proteins").getCellRenderer()).setMinimumChartValue(2.0);

            assaysTable.getColumn("#Peptides").setCellRenderer(new JSparklinesBarChartTableCellRenderer(PlotOrientation.HORIZONTAL, maxNumPeptides, peptideShakerGUI.getSparklineColor()));
            ((JSparklinesBarChartTableCellRenderer) assaysTable.getColumn("#Peptides").getCellRenderer()).showNumberAndChart(true, TableProperties.getLabelWidth());
            ((JSparklinesBarChartTableCellRenderer) assaysTable.getColumn("#Peptides").getCellRenderer()).setLogScale(true);
            ((JSparklinesBarChartTableCellRenderer) assaysTable.getColumn("#Peptides").getCellRenderer()).setMinimumChartValue(2.0);

            assaysTable.getColumn("#Spectra").setCellRenderer(new JSparklinesBarChartTableCellRenderer(PlotOrientation.HORIZONTAL, maxNumSpectra, peptideShakerGUI.getSparklineColor()));
            ((JSparklinesBarChartTableCellRenderer) assaysTable.getColumn("#Spectra").getCellRenderer()).showNumberAndChart(true, TableProperties.getLabelWidth());
            ((JSparklinesBarChartTableCellRenderer) assaysTable.getColumn("#Spectra").getCellRenderer()).setLogScale(true);
            ((JSparklinesBarChartTableCellRenderer) assaysTable.getColumn("#Spectra").getCellRenderer()).setMinimumChartValue(2.0);
        }
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        ((TitledBorder) filesPanel.getBorder()).setTitle(PeptideShakerGUI.TITLED_BORDER_HORIZONTAL_PADDING + "Files");
        projectsPanel.repaint();

        // update the sparklines with the max values
        projectsTable.getColumn("#Assays").setCellRenderer(new JSparklinesBarChartTableCellRenderer(PlotOrientation.HORIZONTAL, maxNumAssays, peptideShakerGUI.getSparklineColor()));
        ((JSparklinesBarChartTableCellRenderer) projectsTable.getColumn("#Assays").getCellRenderer()).showNumberAndChart(true, TableProperties.getLabelWidth());
        ((JSparklinesBarChartTableCellRenderer) projectsTable.getColumn("#Assays").getCellRenderer()).setLogScale(true);
        ((JSparklinesBarChartTableCellRenderer) projectsTable.getColumn("#Assays").getCellRenderer()).setMinimumChartValue(2.0);

        projectsTable.repaint();
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        proteinInferenceTooltipMap.put(PSParameter.RELATED_AND_UNRELATED, "Related and Unrelated Proteins");
        proteinInferenceTooltipMap.put(PSParameter.UNRELATED, "Unrelated Proteins");

        //proteinTable.getColumn("Accession").setCellRenderer(new HtmlLinksRenderer(peptideShakerGUI.getSelectedRowHtmlTagFontColor(), peptideShakerGUI.getNotSelectedRowHtmlTagFontColor()));
        proteinTable.getColumn("PI").setCellRenderer(new JSparklinesIntegerColorTableCellRenderer(peptideShakerGUI.getSparklineColor(), proteinInferenceColorMap, proteinInferenceTooltipMap));
        proteinTable.getColumn("#Peptides").setCellRenderer(new JSparklinesBarChartTableCellRenderer(PlotOrientation.HORIZONTAL, 10.0, peptideShakerGUI.getSparklineColor()));
        ((JSparklinesBarChartTableCellRenderer) proteinTable.getColumn("#Peptides").getCellRenderer()).showNumberAndChart(true, TableProperties.getLabelWidth());
        proteinTable.getColumn("#Spectra").setCellRenderer(new JSparklinesBarChartTableCellRenderer(PlotOrientation.HORIZONTAL, 10.0, peptideShakerGUI.getSparklineColor()));
        ((JSparklinesBarChartTableCellRenderer) proteinTable.getColumn("#Spectra").getCellRenderer()).showNumberAndChart(true, TableProperties.getLabelWidth());
        proteinTable.getColumn("MS2 Quant.").setCellRenderer(new JSparklinesBarChartTableCellRenderer(PlotOrientation.HORIZONTAL, 10.0, peptideShakerGUI.getSparklineColor()));
        ((JSparklinesBarChartTableCellRenderer) proteinTable.getColumn("MS2 Quant.").getCellRenderer()).showNumberAndChart(true, TableProperties.getLabelWidth());
        proteinTable.getColumn("Confidence").setCellRenderer(new JSparklinesBarChartTableCellRenderer(PlotOrientation.HORIZONTAL, 100.0, peptideShakerGUI.getSparklineColor()));
        ((JSparklinesBarChartTableCellRenderer) proteinTable.getColumn("Confidence").getCellRenderer()).showNumberAndChart(
                true, TableProperties.getLabelWidth() - 20, peptideShakerGUI.getScoreAndConfidenceDecimalFormat());
        proteinTable.getColumn("Score").setCellRenderer(new JSparklinesBarChartTableCellRenderer(PlotOrientation.HORIZONTAL, 100.0, peptideShakerGUI.getSparklineColor()));
        ((JSparklinesBarChartTableCellRenderer) proteinTable.getColumn("Score").getCellRenderer()).showNumberAndChart(
                true, TableProperties.getLabelWidth() - 20, peptideShakerGUI.getScoreAndConfidenceDecimalFormat());
        proteinTable.getColumn("Coverage").setCellRenderer(new JSparklinesBarChartTableCellRenderer(PlotOrientation.HORIZONTAL, 100.0, peptideShakerGUI.getSparklineColor()));
        ((JSparklinesBarChartTableCellRenderer) proteinTable.getColumn("Coverage").getCellRenderer()).showNumberAndChart(true, TableProperties.getLabelWidth());
        ((JSparklinesBarChartTableCellRenderer) proteinTable.getColumn("Coverage").getCellRenderer()).setMinimumChartValue(5d);
        proteinTable.getColumn("S").setCellRenderer(new TrueFalseIconRenderer(
                new ImageIcon(this.getClass().getResource("/icons/star_yellow.png")),
                new ImageIcon(this.getClass().getResource("/icons/star_grey.png")),
                new ImageIcon(this.getClass().getResource("/icons/star_grey.png")),
                "Starred", null, null));
        proteinTable.getColumn("H").setCellRenderer(new NimbusCheckBoxRenderer());

        ((JSparklinesBarChartTableCellRenderer) proteinTable.getColumn("#Peptides").getCellRenderer()).setMaxValue(peptideShakerGUI.getMetrics().getMaxNPeptides());
        ((JSparklinesBarChartTableCellRenderer) proteinTable.getColumn("#Spectra").getCellRenderer()).setMaxValue(peptideShakerGUI.getMetrics().getMaxNSpectra());
        ((JSparklinesBarChartTableCellRenderer) proteinTable.getColumn("MS2 Quant.").getCellRenderer()).setMaxValue(peptideShakerGUI.getMetrics().getMaxSpectrumCounting());

        // set up the peptide inference color map
        HashMap<Integer, Color> peptideInferenceColorMap = new HashMap<Integer, Color>();
        peptideInferenceColorMap.put(PSParameter.NOT_GROUP, peptideShakerGUI.getSparklineColor());
        peptideInferenceColorMap.put(PSParameter.RELATED, Color.YELLOW);
        peptideInferenceColorMap.put(PSParameter.RELATED_AND_UNRELATED, Color.ORANGE);
        peptideInferenceColorMap.put(PSParameter.UNRELATED, Color.RED);

        // set up the peptide inference tooltip map
        HashMap<Integer, String> peptideInferenceTooltipMap = new HashMap<Integer, String>();
        peptideInferenceTooltipMap.put(PSParameter.NOT_GROUP, "Unique to a single protein");
        peptideInferenceTooltipMap.put(PSParameter.RELATED, "Belongs to a group of related proteins");
        peptideInferenceTooltipMap.put(PSParameter.RELATED_AND_UNRELATED, "Belongs to a group of related and unrelated proteins");
        peptideInferenceTooltipMap.put(PSParameter.UNRELATED, "Belongs to unrelated proteins");

        peptideTable.getColumn("PI").setCellRenderer(new JSparklinesIntegerColorTableCellRenderer(peptideShakerGUI.getSparklineColor(), peptideInferenceColorMap, peptideInferenceTooltipMap));
        peptideTable.getColumn("Confidence").setCellRenderer(new JSparklinesBarChartTableCellRenderer(PlotOrientation.HORIZONTAL, 100.0, peptideShakerGUI.getSparklineColor()));
        peptideTable.getColumn("#Spectra").setCellRenderer(new JSparklinesBarChartTableCellRenderer(PlotOrientation.HORIZONTAL, 100.0, peptideShakerGUI.getSparklineColor()));
        ((JSparklinesBarChartTableCellRenderer) peptideTable.getColumn("Confidence").getCellRenderer()).showNumberAndChart(
                true, TableProperties.getLabelWidth() - 20, peptideShakerGUI.getScoreAndConfidenceDecimalFormat());
        peptideTable.getColumn("Score").setCellRenderer(new JSparklinesBarChartTableCellRenderer(PlotOrientation.HORIZONTAL, 100.0, peptideShakerGUI.getSparklineColor()));
        ((JSparklinesBarChartTableCellRenderer) peptideTable.getColumn("Score").getCellRenderer()).showNumberAndChart(
                true, TableProperties.getLabelWidth() - 20, peptideShakerGUI.getScoreAndConfidenceDecimalFormat());
        ((JSparklinesBarChartTableCellRenderer) peptideTable.getColumn("#Spectra").getCellRenderer()).showNumberAndChart(true, TableProperties.getLabelWidth() + 5);
        peptideTable.getColumn("S").setCellRenderer(new TrueFalseIconRenderer(
                new ImageIcon(this.getClass().getResource("/icons/star_yellow.png")),
                new ImageIcon(this.getClass().getResource("/icons/star_grey.png")),
                new ImageIcon(this.getClass().getResource("/icons/star_grey.png")),
                "Starred", null, null));
        peptideTable.getColumn("H").setCellRenderer(new NimbusCheckBoxRenderer());

        ((JSparklinesBarChartTableCellRenderer) peptideTable.getColumn("#Spectra").getCellRenderer()).setMaxValue(peptideShakerGUI.getMetrics().getMaxNSpectra()); // @TODO: this is not the correct max value

        psmTable.getColumn("S").setCellRenderer(new TrueFalseIconRenderer(
                new ImageIcon(this.getClass().getResource("/icons/star_yellow.png")),
                new ImageIcon(this.getClass().getResource("/icons/star_grey.png")),
                new ImageIcon(this.getClass().getResource("/icons/star_grey.png")),
                "Starred", null, null));
        psmTable.getColumn("H").setCellRenderer(new NimbusCheckBoxRenderer());
        psmTable.getColumn("m/z").setCellRenderer(new JSparklinesBarChartTableCellRenderer(PlotOrientation.HORIZONTAL, SpectrumFactory.getInstance().getMaxMz(), peptideShakerGUI.getSparklineColor()));
        psmTable.getColumn("Charge").setCellRenderer(new JSparklinesBarChartTableCellRenderer(PlotOrientation.HORIZONTAL,
                (double) ((PSMaps) peptideShakerGUI.getIdentification().getUrParam(new PSMaps())).getPsmSpecificMap().getMaxCharge(), peptideShakerGUI.getSparklineColor()));
        psmTable.getColumn("RT").setCellRenderer(new JSparklinesIntervalChartTableCellRenderer(PlotOrientation.HORIZONTAL, SpectrumFactory.getInstance().getMinRT(),
                SpectrumFactory.getInstance().getMaxRT(), SpectrumFactory.getInstance().getMaxRT() / 50, peptideShakerGUI.getSparklineColor(), peptideShakerGUI.getSparklineColor()));
        ((JSparklinesBarChartTableCellRenderer) psmTable.getColumn("m/z").getCellRenderer()).showNumberAndChart(true, TableProperties.getLabelWidth());
        ((JSparklinesBarChartTableCellRenderer) psmTable.getColumn("Charge").getCellRenderer()).showNumberAndChart(true, TableProperties.getLabelWidth());
        ((JSparklinesIntervalChartTableCellRenderer) psmTable.getColumn("RT").getCellRenderer()).showNumberAndChart(true, TableProperties.getLabelWidth() + 5);
        ((JSparklinesIntervalChartTableCellRenderer) psmTable.getColumn("RT").getCellRenderer()).showReferenceLine(true, 0.02, java.awt.Color.BLACK);
        psmTable.getColumn("Mass Error").setCellRenderer(new JSparklinesBarChartTableCellRenderer(PlotOrientation.HORIZONTAL,
                peptideShakerGUI.getSearchParameters().getPrecursorAccuracy(), peptideShakerGUI.getSparklineColor()));
        ((JSparklinesBarChartTableCellRenderer) psmTable.getColumn("Mass Error").getCellRenderer()).showNumberAndChart(true, TableProperties.getLabelWidth() + 5);
        ((JSparklinesBarChartTableCellRenderer) psmTable.getColumn("Mass Error").getCellRenderer()).setMaxValue(
                peptideShakerGUI.getSearchParameters().getPrecursorAccuracy());
        psmTable.getColumn("Confidence").setCellRenderer(new JSparklinesBarChartTableCellRenderer(PlotOrientation.HORIZONTAL, 100.0, peptideShakerGUI.getSparklineColor()));
        ((JSparklinesBarChartTableCellRenderer) psmTable.getColumn("Confidence").getCellRenderer()).showNumberAndChart(
                true, TableProperties.getLabelWidth() - 20, peptideShakerGUI.getScoreAndConfidenceDecimalFormat());

        spectrumFilesTable.getColumn(" ").setCellRenderer(new NimbusCheckBoxRenderer());
        modificationTable.getColumn(" ").setCellRenderer(new NimbusCheckBoxRenderer());
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        proteinTable.getColumn("PI").setCellRenderer(new JSparklinesIntegerColorTableCellRenderer(peptideShakerGUI.getSparklineColor(), proteinInferenceColorMap, proteinInferenceTooltipMap));
        proteinTable.getColumn("#Peptides").setCellRenderer(new JSparklinesArrayListBarChartTableCellRenderer(PlotOrientation.HORIZONTAL, 100.0, sparklineColors, JSparklinesArrayListBarChartTableCellRenderer.ValueDisplayType.sumOfNumbers));
        ((JSparklinesArrayListBarChartTableCellRenderer) proteinTable.getColumn("#Peptides").getCellRenderer()).showNumberAndChart(true, TableProperties.getLabelWidth(), new DecimalFormat("0"));
        proteinTable.getColumn("#Spectra").setCellRenderer(new JSparklinesArrayListBarChartTableCellRenderer(PlotOrientation.HORIZONTAL, 100.0, sparklineColors, JSparklinesArrayListBarChartTableCellRenderer.ValueDisplayType.sumOfNumbers));
        ((JSparklinesArrayListBarChartTableCellRenderer) proteinTable.getColumn("#Spectra").getCellRenderer()).showNumberAndChart(true, TableProperties.getLabelWidth(), new DecimalFormat("0"));
        proteinTable.getColumn("MS2 Quant.").setCellRenderer(new JSparklinesBarChartTableCellRenderer(PlotOrientation.HORIZONTAL, 10.0, peptideShakerGUI.getSparklineColor()));
        ((JSparklinesBarChartTableCellRenderer) proteinTable.getColumn("MS2 Quant.").getCellRenderer()).showNumberAndChart(true, TableProperties.getLabelWidth());
        proteinTable.getColumn("MW").setCellRenderer(new JSparklinesBarChartTableCellRenderer(PlotOrientation.HORIZONTAL, 10.0, peptideShakerGUI.getSparklineColor()));
        ((JSparklinesBarChartTableCellRenderer) proteinTable.getColumn("MW").getCellRenderer()).showNumberAndChart(true, TableProperties.getLabelWidth());

        proteinTable.getColumn("Chr").setCellRenderer(new ChromosomeTableCellRenderer());

        try {
            proteinTable.getColumn("Confidence").setCellRenderer(new JSparklinesBarChartTableCellRenderer(PlotOrientation.HORIZONTAL, 100.0, peptideShakerGUI.getSparklineColor()));
            ((JSparklinesBarChartTableCellRenderer) proteinTable.getColumn("Confidence").getCellRenderer()).showNumberAndChart(
                    true, TableProperties.getLabelWidth() - 20, peptideShakerGUI.getScoreAndConfidenceDecimalFormat());
        } catch (IllegalArgumentException e) {
            proteinTable.getColumn("Score").setCellRenderer(new JSparklinesBarChartTableCellRenderer(PlotOrientation.HORIZONTAL, 100.0, peptideShakerGUI.getSparklineColor()));
            ((JSparklinesBarChartTableCellRenderer) proteinTable.getColumn("Score").getCellRenderer()).showNumberAndChart(
                    true, TableProperties.getLabelWidth() - 20, peptideShakerGUI.getScoreAndConfidenceDecimalFormat());
        }

        proteinTable.getColumn("Coverage").setCellRenderer(new JSparklinesTwoValueBarChartTableCellRenderer(PlotOrientation.HORIZONTAL, 100.0,
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                }
            }

            if (annotationPreferences.getFragmentIonTypes().contains(PeptideFragmentIon.A_ION)) {
                try {
                    getColumn("a" + modification).setCellRenderer(new JSparklinesBarChartTableCellRenderer(PlotOrientation.HORIZONTAL, tableContent.getMaxIntensity(),
                            SpectrumPanel.determineFragmentIonColor(new PeptideFragmentIon(PeptideFragmentIon.A_ION), false)));
                    ((JSparklinesBarChartTableCellRenderer) getColumn("a" + modification).getCellRenderer()).setMinimumChartValue(0);
                } catch (IllegalArgumentException e) {
                    // do nothing
                }
            }
            if (annotationPreferences.getFragmentIonTypes().contains(PeptideFragmentIon.B_ION)) {
                try {
                    getColumn("b" + modification).setCellRenderer(new JSparklinesBarChartTableCellRenderer(PlotOrientation.HORIZONTAL, tableContent.getMaxIntensity(),
                            SpectrumPanel.determineFragmentIonColor(new PeptideFragmentIon(PeptideFragmentIon.B_ION), false)));
                    ((JSparklinesBarChartTableCellRenderer) getColumn("b" + modification).getCellRenderer()).setMinimumChartValue(0);
                } catch (IllegalArgumentException e) {
                    // do nothing
                }
            }
            if (annotationPreferences.getFragmentIonTypes().contains(PeptideFragmentIon.C_ION)) {
                try {
                    getColumn("c" + modification).setCellRenderer(new JSparklinesBarChartTableCellRenderer(PlotOrientation.HORIZONTAL, tableContent.getMaxIntensity(),
                            SpectrumPanel.determineFragmentIonColor(new PeptideFragmentIon(PeptideFragmentIon.C_ION), false)));
                    ((JSparklinesBarChartTableCellRenderer) getColumn("c" + modification).getCellRenderer()).setMinimumChartValue(0);
                } catch (IllegalArgumentException e) {
                    // do nothing
                }
            }

            if (annotationPreferences.getFragmentIonTypes().contains(PeptideFragmentIon.X_ION)) {
                try {
                    getColumn("x" + modification).setCellRenderer(new JSparklinesBarChartTableCellRenderer(PlotOrientation.HORIZONTAL, tableContent.getMaxIntensity(),
                            SpectrumPanel.determineFragmentIonColor(new PeptideFragmentIon(PeptideFragmentIon.X_ION), false)));
                    ((JSparklinesBarChartTableCellRenderer) getColumn("x" + modification).getCellRenderer()).setMinimumChartValue(0);
                } catch (IllegalArgumentException e) {
                    // do nothing
                }
            }
            if (annotationPreferences.getFragmentIonTypes().contains(PeptideFragmentIon.Y_ION)) {
                try {
                    getColumn("y" + modification).setCellRenderer(new JSparklinesBarChartTableCellRenderer(PlotOrientation.HORIZONTAL, tableContent.getMaxIntensity(),
                            SpectrumPanel.determineFragmentIonColor(new PeptideFragmentIon(PeptideFragmentIon.Y_ION), false)));
                    ((JSparklinesBarChartTableCellRenderer) getColumn("y" + modification).getCellRenderer()).setMinimumChartValue(0);
                } catch (IllegalArgumentException e) {
                    // do nothing
                }
            }
            if (annotationPreferences.getFragmentIonTypes().contains(PeptideFragmentIon.Z_ION)) {
                try {
                    getColumn("z" + modification).setCellRenderer(new JSparklinesBarChartTableCellRenderer(PlotOrientation.HORIZONTAL, tableContent.getMaxIntensity(),
                            SpectrumPanel.determineFragmentIonColor(new PeptideFragmentIon(PeptideFragmentIon.Z_ION), false)));
                    ((JSparklinesBarChartTableCellRenderer) getColumn("z" + modification).getCellRenderer()).setMinimumChartValue(0);
                } catch (IllegalArgumentException e) {
                    // do nothing
                }
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                "Enzymatic", "Not Enzymatic"));

        uniqueHitsTable.getColumn("Protein(s)").setCellRenderer(new HtmlLinksRenderer(
                TableProperties.getSelectedRowHtmlTagFontColor(), TableProperties.getNotSelectedRowHtmlTagFontColor()));
        uniqueHitsTable.getColumn(" ").setCellRenderer(new JSparklinesIntegerIconTableCellRenderer(MatchValidationLevel.getIconMap(this.getClass()), MatchValidationLevel.getTooltipMap()));
        uniqueHitsTable.getColumn("Score").setCellRenderer(new JSparklinesBarChartTableCellRenderer(PlotOrientation.HORIZONTAL, 100.0, peptideShakerGUI.getSparklineColor()));
        uniqueHitsTable.getColumn("Confidence").setCellRenderer(new JSparklinesBarChartTableCellRenderer(PlotOrientation.HORIZONTAL, 100.0, peptideShakerGUI.getSparklineColor()));
        ((JSparklinesBarChartTableCellRenderer) uniqueHitsTable.getColumn("Score").getCellRenderer()).showNumberAndChart(true, TableProperties.getLabelWidth() + 5);
        ((JSparklinesBarChartTableCellRenderer) uniqueHitsTable.getColumn("Confidence").getCellRenderer()).showNumberAndChart(true, TableProperties.getLabelWidth() + 5);

        relatedHitsTable.getColumn("Protein(s)").setCellRenderer(new HtmlLinksRenderer(
                TableProperties.getSelectedRowHtmlTagFontColor(), TableProperties.getNotSelectedRowHtmlTagFontColor()));
        relatedHitsTable.getColumn(" ").setCellRenderer(new JSparklinesIntegerIconTableCellRenderer(MatchValidationLevel.getIconMap(this.getClass()), MatchValidationLevel.getTooltipMap()));
        relatedHitsTable.getColumn("Score").setCellRenderer(new JSparklinesBarChartTableCellRenderer(PlotOrientation.HORIZONTAL, 100.0, peptideShakerGUI.getSparklineColor()));
        relatedHitsTable.getColumn("Confidence").setCellRenderer(new JSparklinesBarChartTableCellRenderer(PlotOrientation.HORIZONTAL, 100.0, peptideShakerGUI.getSparklineColor()));
        ((JSparklinesBarChartTableCellRenderer) relatedHitsTable.getColumn("Score").getCellRenderer()).showNumberAndChart(true, TableProperties.getLabelWidth() + 5);
        ((JSparklinesBarChartTableCellRenderer) relatedHitsTable.getColumn("Confidence").getCellRenderer()).showNumberAndChart(true, TableProperties.getLabelWidth() + 5);

        // set up the table header tooltips
        candidateProteinsTableToolTips = new ArrayList<String>();
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        JSparklinesArrayListBarChartTableCellRenderer spectraCellRenderer = new JSparklinesArrayListBarChartTableCellRenderer(PlotOrientation.HORIZONTAL, 100.0, sparklineColors, JSparklinesArrayListBarChartTableCellRenderer.ValueDisplayType.sumOfNumbers);
        spectraCellRenderer.showNumberAndChart(true, TableProperties.getLabelWidth(), new DecimalFormat("0"));
        proteinTable.getColumn("#Spectra").setCellRenderer(spectraCellRenderer);

        JSparklinesBarChartTableCellRenderer spectrumCountingCellRenderer = new JSparklinesBarChartTableCellRenderer(PlotOrientation.HORIZONTAL, 10.0, sparklineColor);
        spectrumCountingCellRenderer.showNumberAndChart(true, TableProperties.getLabelWidth());
        proteinTable.getColumn("MS2 Quant.").setCellRenderer(spectrumCountingCellRenderer);

        JSparklinesBarChartTableCellRenderer mwCellRenderer = new JSparklinesBarChartTableCellRenderer(PlotOrientation.HORIZONTAL, 10.0, sparklineColor);
        mwCellRenderer.showNumberAndChart(true, TableProperties.getLabelWidth());
        proteinTable.getColumn("MW").setCellRenderer(mwCellRenderer);

        proteinTable.getColumn("Chr").setCellRenderer(new ChromosomeTableCellRenderer());

        try {
            proteinTable.getColumn("Confidence").setCellRenderer(new JSparklinesBarChartTableCellRenderer(PlotOrientation.HORIZONTAL, 100.0, sparklineColor));
            ((JSparklinesBarChartTableCellRenderer) proteinTable.getColumn("Confidence").getCellRenderer()).showNumberAndChart(
                    true, TableProperties.getLabelWidth() - 20, scoreAndConfidenceDecimalFormat);
        } catch (IllegalArgumentException e) {
            proteinTable.getColumn("Score").setCellRenderer(new JSparklinesBarChartTableCellRenderer(PlotOrientation.HORIZONTAL, 100.0, sparklineColor));
            ((JSparklinesBarChartTableCellRenderer) proteinTable.getColumn("Score").getCellRenderer()).showNumberAndChart(
                    true, TableProperties.getLabelWidth() - 20, scoreAndConfidenceDecimalFormat);
        }

        proteinTable.getColumn("").setCellRenderer(new JSparklinesIntegerIconTableCellRenderer(MatchValidationLevel.getIconMap(parentClass), MatchValidationLevel.getTooltipMap()));
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