Package eu.isas.peptideshaker.gui.tablemodels

Examples of eu.isas.peptideshaker.gui.tablemodels.ProteinTableModel

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                // update the table model
                if (proteinTable.getRowCount() > 0) {
                    ((ProteinTableModel) proteinTable.getModel()).updateDataModel(peptideShakerGUI.getIdentification(), peptideShakerGUI.getIdentificationFeaturesGenerator(), peptideShakerGUI.getDisplayFeaturesGenerator(), peptideShakerGUI.getExceptionHandler(), proteinKeys);
                } else {
                    ProteinTableModel proteinTableModel = new ProteinTableModel(peptideShakerGUI.getIdentification(), peptideShakerGUI.getIdentificationFeaturesGenerator(), peptideShakerGUI.getDisplayFeaturesGenerator(), peptideShakerGUI.getExceptionHandler(), proteinKeys);
                    proteinTable.setModel(proteinTableModel);
                }

                setTableProperties();
                showSparkLines(peptideShakerGUI.showSparklines());
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     */
    public void clearData() {

        proteinKeys.clear();

        ProteinTableModel proteinTableModel = (ProteinTableModel) proteinTable.getModel();
        proteinTableModel.reset();

        proteinTableModel.fireTableDataChanged();

        ((TitledBorder) proteinPanel.getBorder()).setTitle(PeptideShakerGUI.TITLED_BORDER_HORIZONTAL_PADDING + "Proteins" + PeptideShakerGUI.TITLED_BORDER_HORIZONTAL_PADDING);
        proteinPanel.repaint();
        ((TitledBorder) plotsPanel.getBorder()).setTitle(PeptideShakerGUI.TITLED_BORDER_HORIZONTAL_PADDING + "Peptides" + PeptideShakerGUI.TITLED_BORDER_HORIZONTAL_PADDING);
        plotsPanel.repaint();
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        proteinsPanel.setBorder(javax.swing.BorderFactory.createTitledBorder("Proteins"));
        proteinsPanel.setOpaque(false);

        proteinScrollPane.setOpaque(false);

        proteinTable.setModel(new ProteinTableModel());
        proteinTable.setOpaque(false);
        proteinTable.setSelectionMode(javax.swing.ListSelectionModel.SINGLE_SELECTION);
        proteinTable.addMouseListener(new java.awt.event.MouseAdapter() {
            public void mouseClicked(java.awt.event.MouseEvent evt) {
                proteinTableMouseClicked(evt);
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                    // update the table model
                    if (proteinTable.getRowCount() > 0) {
                        ((ProteinTableModel) proteinTable.getModel()).updateDataModel(peptideShakerGUI.getIdentification(), peptideShakerGUI.getIdentificationFeaturesGenerator(), peptideShakerGUI.getDisplayFeaturesGenerator(), peptideShakerGUI.getExceptionHandler(), proteinKeys);
                    } else {
                        ProteinTableModel proteinTableModel = new ProteinTableModel(peptideShakerGUI.getIdentification(), peptideShakerGUI.getIdentificationFeaturesGenerator(), peptideShakerGUI.getDisplayFeaturesGenerator(), peptideShakerGUI.getExceptionHandler(), proteinKeys);
                        proteinTable.setModel(proteinTableModel);
                    }

                    setTableProperties();
                    showSparkLines(peptideShakerGUI.showSparklines());
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        proteinsLayeredPanel.setBorder(javax.swing.BorderFactory.createTitledBorder("Proteins"));
        proteinsLayeredPanel.setOpaque(false);

        proteinScrollPane.setOpaque(false);

        proteinTable.setModel(new ProteinTableModel());
        proteinTable.setOpaque(false);
        proteinTable.setSelectionMode(javax.swing.ListSelectionModel.SINGLE_SELECTION);
        proteinTable.addMouseListener(new java.awt.event.MouseAdapter() {
            public void mouseReleased(java.awt.event.MouseEvent evt) {
                proteinTableMouseReleased(evt);
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                    // update the table model
                    if (proteinTable.getRowCount() > 0) {
                        ((ProteinTableModel) proteinTable.getModel()).updateDataModel(peptideShakerGUI.getIdentification(), peptideShakerGUI.getIdentificationFeaturesGenerator(), peptideShakerGUI.getDisplayFeaturesGenerator(), peptideShakerGUI.getExceptionHandler(), proteinKeys);
                    } else {
                        ProteinTableModel proteinTableModel = new ProteinTableModel(peptideShakerGUI.getIdentification(), peptideShakerGUI.getIdentificationFeaturesGenerator(), peptideShakerGUI.getDisplayFeaturesGenerator(), peptideShakerGUI.getExceptionHandler(), proteinKeys);
                        proteinTable.setModel(proteinTableModel);
                    }

                    setTableProperties();
                    showSparkLines(peptideShakerGUI.showSparklines());
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        DefaultTableModel psmTableModel = (DefaultTableModel) psmTable.getModel();
        psmTableModel.getDataVector().removeAllElements();
        DefaultTableModel peptideTableModel = (DefaultTableModel) peptideTable.getModel();
        peptideTableModel.getDataVector().removeAllElements();
        ProteinTableModel proteinTableModel = (ProteinTableModel) proteinTable.getModel();
        proteinTableModel.reset();

        psmTableModel.fireTableDataChanged();
        peptideTableModel.fireTableDataChanged();
        proteinTableModel.fireTableDataChanged();

        currentSpectrumKey = "";
        currentProteinSequence = "";
        spectrumPanel = null;
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Related Classes of eu.isas.peptideshaker.gui.tablemodels.ProteinTableModel

  • com.compomics.util.experiment.biology.Protein
  • com.compomics.util.experiment.identification.matches.ProteinMatch
  • eu.isas.peptideshaker.gui.tabpanels.OverviewPanel
  • eu.isas.peptideshaker.gui.tabpanels.ProteinFractionsPanel
  • eu.isas.peptideshaker.gui.tabpanels.ProteinStructurePanel
  • eu.isas.peptideshaker.myparameters.PSParameter
  • no.uib.jsparklines.data.ArrrayListDataPoints
  • no.uib.jsparklines.data.Chromosome
  • no.uib.jsparklines.extra.ChromosomeTableCellRenderer
  • no.uib.jsparklines.extra.HtmlLinksRenderer
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