Package no.uib.jsparklines.extra

Examples of no.uib.jsparklines.extra.TrueFalseIconRenderer

189
190
191
192
193
194
195
196
197
198
199
                PlotOrientation.HORIZONTAL, -10.0, 10.0, Color.RED, peptideShakerGUI.getSparklineColor(), Color.lightGray, 0));
        ((JSparklinesBarChartTableCellRenderer) goMappingsTable.getColumn("Log2 Diff").getCellRenderer()).showNumberAndChart(true, TableProperties.getLabelWidth());
        goMappingsTable.getColumn("Frequency (%)").setCellRenderer(new JSparklinesTableCellRenderer(
                JSparklinesTableCellRenderer.PlotType.barChart,
                PlotOrientation.HORIZONTAL, 0.0, 100.0));
        goMappingsTable.getColumn("  ").setCellRenderer(new TrueFalseIconRenderer(
                new ImageIcon(this.getClass().getResource("/icons/selected_green.png")),
                null,
                "Selected", null));

        // make the tabs in the tabbed pane go from right to left
View Full Code Here
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
        peptideInferenceTooltipMap.put(PSParameter.RELATED_AND_UNRELATED, "Belongs to a group of related and unrelated proteins");
        peptideInferenceTooltipMap.put(PSParameter.UNRELATED, "Belongs to unrelated proteins");

        peptideTable.getColumn("PI").setCellRenderer(new JSparklinesIntegerColorTableCellRenderer(peptideShakerGUI.getSparklineColor(), peptideInferenceColorMap, peptideInferenceTooltipMap));
        peptideTable.getColumn("Start").setCellRenderer(new JSparklinesIntervalChartTableCellRenderer(PlotOrientation.HORIZONTAL, 100d, 100d, peptideShakerGUI.getSparklineColor()));
        peptideTable.getColumn("PDB").setCellRenderer(new TrueFalseIconRenderer(
                new ImageIcon(this.getClass().getResource("/icons/pdb.png")),
                null,
                "Mapped to PDB Structure", null));
        peptideTable.getColumn("").setCellRenderer(new JSparklinesIntegerIconTableCellRenderer(MatchValidationLevel.getIconMap(this.getClass()), MatchValidationLevel.getTooltipMap()));
        peptideTable.getColumn("  ").setCellRenderer(new TrueFalseIconRenderer(
                new ImageIcon(this.getClass().getResource("/icons/star_yellow.png")),
                new ImageIcon(this.getClass().getResource("/icons/star_grey.png")),
                new ImageIcon(this.getClass().getResource("/icons/star_grey.png")),
                "Starred", null, null));
    }
View Full Code Here
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
        proteinInferenceTooltipMap.put(PSParameter.RELATED_AND_UNRELATED, "Belongs to a group of related and unrelated proteins");
        proteinInferenceTooltipMap.put(PSParameter.UNRELATED, "Belongs to unrelated proteins");

        peptidesTable.getColumn("PI").setCellRenderer(new JSparklinesIntegerColorTableCellRenderer(Color.lightGray, proteinInferenceColorMap, proteinInferenceTooltipMap));
        relatedPeptidesTable.getColumn("PI").setCellRenderer(new JSparklinesIntegerColorTableCellRenderer(Color.lightGray, proteinInferenceColorMap, proteinInferenceTooltipMap));
        peptidesTable.getColumn("   ").setCellRenderer(new TrueFalseIconRenderer(
                new ImageIcon(this.getClass().getResource("/icons/star_yellow.png")),
                new ImageIcon(this.getClass().getResource("/icons/star_grey.png")),
                new ImageIcon(this.getClass().getResource("/icons/star_grey.png")),
                "Starred", null, null));
        relatedPeptidesTable.getColumn("   ").setCellRenderer(new TrueFalseIconRenderer(
                new ImageIcon(this.getClass().getResource("/icons/star_yellow.png")),
                new ImageIcon(this.getClass().getResource("/icons/star_grey.png")),
                new ImageIcon(this.getClass().getResource("/icons/star_grey.png")),
                "Starred", null, null));

        // set up the PTM confidence color map
        HashMap<Integer, Color> ptmConfidenceColorMap = new HashMap<Integer, Color>();
        ptmConfidenceColorMap.put(PtmScoring.NOT_FOUND, Color.lightGray);
        ptmConfidenceColorMap.put(PtmScoring.RANDOM, Color.RED);
        ptmConfidenceColorMap.put(PtmScoring.DOUBTFUL, Color.ORANGE);
        ptmConfidenceColorMap.put(PtmScoring.CONFIDENT, Color.YELLOW);
        ptmConfidenceColorMap.put(PtmScoring.VERY_CONFIDENT, peptideShakerGUI.getSparklineColor());

        // set up the PTM confidence tooltip map
        ptmConfidenceTooltipMap = new HashMap<Integer, String>();
        ptmConfidenceTooltipMap.put(-1, "(No PTMs)");
        ptmConfidenceTooltipMap.put(PtmScoring.RANDOM, "Random Assignment");
        ptmConfidenceTooltipMap.put(PtmScoring.DOUBTFUL, "Doubtful Assignment");
        ptmConfidenceTooltipMap.put(PtmScoring.CONFIDENT, "Confident Assignment");
        ptmConfidenceTooltipMap.put(PtmScoring.VERY_CONFIDENT, "Very Confident Assignment");

        peptidesTable.getColumn("PTM").setCellRenderer(new JSparklinesIntegerColorTableCellRenderer(Color.lightGray, ptmConfidenceColorMap, ptmConfidenceTooltipMap));
        relatedPeptidesTable.getColumn("PTM").setCellRenderer(new JSparklinesIntegerColorTableCellRenderer(Color.lightGray, ptmConfidenceColorMap, ptmConfidenceTooltipMap));
        selectedPsmsTable.getColumn("PTM").setCellRenderer(new JSparklinesIntegerColorTableCellRenderer(Color.lightGray, ptmConfidenceColorMap, ptmConfidenceTooltipMap));
        relatedPsmsTable.getColumn("PTM").setCellRenderer(new JSparklinesIntegerColorTableCellRenderer(Color.lightGray, ptmConfidenceColorMap, ptmConfidenceTooltipMap));

        peptidesTable.getColumn("Peptide").setCellRenderer(new JSparklinesBarChartTableCellRenderer(PlotOrientation.HORIZONTAL, 100.0, peptideShakerGUI.getSparklineColor()));
        ((JSparklinesBarChartTableCellRenderer) peptidesTable.getColumn("Peptide").getCellRenderer()).showNumberAndChart(
                true, TableProperties.getLabelWidth() - 20, peptideShakerGUI.getScoreAndConfidenceDecimalFormat());
        peptidesTable.getColumn("  ").setCellRenderer(new JSparklinesIntegerIconTableCellRenderer(MatchValidationLevel.getIconMap(this.getClass()), MatchValidationLevel.getTooltipMap()));

        relatedPeptidesTable.getColumn("Peptide").setCellRenderer(new JSparklinesBarChartTableCellRenderer(PlotOrientation.HORIZONTAL, 100.0, peptideShakerGUI.getSparklineColor()));
        ((JSparklinesBarChartTableCellRenderer) relatedPeptidesTable.getColumn("Peptide").getCellRenderer()).showNumberAndChart(
                true, TableProperties.getLabelWidth() - 20, peptideShakerGUI.getScoreAndConfidenceDecimalFormat());
        relatedPeptidesTable.getColumn("  ").setCellRenderer(new JSparklinesIntegerIconTableCellRenderer(MatchValidationLevel.getIconMap(this.getClass()), MatchValidationLevel.getTooltipMap()));

        selectedPsmsTable.getColumn("Charge").setCellRenderer(new JSparklinesBarChartTableCellRenderer(PlotOrientation.HORIZONTAL, 10.0, peptideShakerGUI.getSparklineColor()));
        ((JSparklinesBarChartTableCellRenderer) selectedPsmsTable.getColumn("Charge").getCellRenderer()).showNumberAndChart(true, TableProperties.getLabelWidth() - 30);
        selectedPsmsTable.getColumn("  ").setCellRenderer(new JSparklinesIntegerIconTableCellRenderer(MatchValidationLevel.getIconMap(this.getClass()), MatchValidationLevel.getTooltipMap()));
        selectedPsmsTable.getColumn("RT").setCellRenderer(new JSparklinesIntervalChartTableCellRenderer(PlotOrientation.HORIZONTAL, 0d,
                1000d, 10d, peptideShakerGUI.getSparklineColor(), peptideShakerGUI.getSparklineColor()));
        ((JSparklinesIntervalChartTableCellRenderer) selectedPsmsTable.getColumn("RT").getCellRenderer()).showNumberAndChart(true, TableProperties.getLabelWidth() + 5);
        ((JSparklinesIntervalChartTableCellRenderer) selectedPsmsTable.getColumn("RT").getCellRenderer()).showReferenceLine(true, 0.02, java.awt.Color.BLACK);
        selectedPsmsTable.getColumn("   ").setCellRenderer(new TrueFalseIconRenderer(
                new ImageIcon(this.getClass().getResource("/icons/star_yellow.png")),
                new ImageIcon(this.getClass().getResource("/icons/star_grey.png")),
                new ImageIcon(this.getClass().getResource("/icons/star_grey.png")),
                "Starred", null, null));

        relatedPsmsTable.getColumn("Charge").setCellRenderer(new JSparklinesBarChartTableCellRenderer(PlotOrientation.HORIZONTAL, 10.0, peptideShakerGUI.getSparklineColor()));
        ((JSparklinesBarChartTableCellRenderer) relatedPsmsTable.getColumn("Charge").getCellRenderer()).showNumberAndChart(true, TableProperties.getLabelWidth() - 30);
        relatedPsmsTable.getColumn("  ").setCellRenderer(new JSparklinesIntegerIconTableCellRenderer(MatchValidationLevel.getIconMap(this.getClass()), MatchValidationLevel.getTooltipMap()));
        relatedPsmsTable.getColumn("RT").setCellRenderer(new JSparklinesIntervalChartTableCellRenderer(PlotOrientation.HORIZONTAL, 0d,
                1000d, 10d, peptideShakerGUI.getSparklineColor(), peptideShakerGUI.getSparklineColor()));
        ((JSparklinesIntervalChartTableCellRenderer) relatedPsmsTable.getColumn("RT").getCellRenderer()).showNumberAndChart(true, TableProperties.getLabelWidth() + 5);
        ((JSparklinesIntervalChartTableCellRenderer) relatedPsmsTable.getColumn("RT").getCellRenderer()).showReferenceLine(true, 0.02, java.awt.Color.BLACK);
        relatedPsmsTable.getColumn("   ").setCellRenderer(new TrueFalseIconRenderer(
                new ImageIcon(this.getClass().getResource("/icons/star_yellow.png")),
                new ImageIcon(this.getClass().getResource("/icons/star_grey.png")),
                new ImageIcon(this.getClass().getResource("/icons/star_grey.png")),
                "Starred", null, null));
View Full Code Here
314
315
316
317
318
319
320
321
322
323
324
        projectsTable.getColumn("Accession").setCellRenderer(new HtmlLinksRenderer(TableProperties.getSelectedRowHtmlTagFontColor(), TableProperties.getNotSelectedRowHtmlTagFontColor()));
        assaysTable.getColumn("Accession").setCellRenderer(new HtmlLinksRenderer(TableProperties.getSelectedRowHtmlTagFontColor(), TableProperties.getNotSelectedRowHtmlTagFontColor()));
        filesTable.getColumn("Assay").setCellRenderer(new HtmlLinksRenderer(TableProperties.getSelectedRowHtmlTagFontColor(), TableProperties.getNotSelectedRowHtmlTagFontColor()));
        filesTable.getColumn("Download").setCellRenderer(new HtmlLinksRenderer(TableProperties.getSelectedRowHtmlTagFontColor(), TableProperties.getNotSelectedRowHtmlTagFontColor()));

        filesTable.getColumn("  ").setCellRenderer(new TrueFalseIconRenderer(
                new ImageIcon(this.getClass().getResource("/icons/accept.png")),
                null,
                "Reshakeable", null));

        projectsTableToolTips = new ArrayList<String>();
View Full Code Here
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
        ((JSparklinesBarChartTableCellRenderer) proteinTable.getColumn("Score").getCellRenderer()).showNumberAndChart(
                true, TableProperties.getLabelWidth() - 20, peptideShakerGUI.getScoreAndConfidenceDecimalFormat());
        proteinTable.getColumn("Coverage").setCellRenderer(new JSparklinesBarChartTableCellRenderer(PlotOrientation.HORIZONTAL, 100.0, peptideShakerGUI.getSparklineColor()));
        ((JSparklinesBarChartTableCellRenderer) proteinTable.getColumn("Coverage").getCellRenderer()).showNumberAndChart(true, TableProperties.getLabelWidth());
        ((JSparklinesBarChartTableCellRenderer) proteinTable.getColumn("Coverage").getCellRenderer()).setMinimumChartValue(5d);
        proteinTable.getColumn("S").setCellRenderer(new TrueFalseIconRenderer(
                new ImageIcon(this.getClass().getResource("/icons/star_yellow.png")),
                new ImageIcon(this.getClass().getResource("/icons/star_grey.png")),
                new ImageIcon(this.getClass().getResource("/icons/star_grey.png")),
                "Starred", null, null));
        proteinTable.getColumn("H").setCellRenderer(new NimbusCheckBoxRenderer());

        ((JSparklinesBarChartTableCellRenderer) proteinTable.getColumn("#Peptides").getCellRenderer()).setMaxValue(peptideShakerGUI.getMetrics().getMaxNPeptides());
        ((JSparklinesBarChartTableCellRenderer) proteinTable.getColumn("#Spectra").getCellRenderer()).setMaxValue(peptideShakerGUI.getMetrics().getMaxNSpectra());
        ((JSparklinesBarChartTableCellRenderer) proteinTable.getColumn("MS2 Quant.").getCellRenderer()).setMaxValue(peptideShakerGUI.getMetrics().getMaxSpectrumCounting());

        // set up the peptide inference color map
        HashMap<Integer, Color> peptideInferenceColorMap = new HashMap<Integer, Color>();
        peptideInferenceColorMap.put(PSParameter.NOT_GROUP, peptideShakerGUI.getSparklineColor());
        peptideInferenceColorMap.put(PSParameter.RELATED, Color.YELLOW);
        peptideInferenceColorMap.put(PSParameter.RELATED_AND_UNRELATED, Color.ORANGE);
        peptideInferenceColorMap.put(PSParameter.UNRELATED, Color.RED);

        // set up the peptide inference tooltip map
        HashMap<Integer, String> peptideInferenceTooltipMap = new HashMap<Integer, String>();
        peptideInferenceTooltipMap.put(PSParameter.NOT_GROUP, "Unique to a single protein");
        peptideInferenceTooltipMap.put(PSParameter.RELATED, "Belongs to a group of related proteins");
        peptideInferenceTooltipMap.put(PSParameter.RELATED_AND_UNRELATED, "Belongs to a group of related and unrelated proteins");
        peptideInferenceTooltipMap.put(PSParameter.UNRELATED, "Belongs to unrelated proteins");

        peptideTable.getColumn("PI").setCellRenderer(new JSparklinesIntegerColorTableCellRenderer(peptideShakerGUI.getSparklineColor(), peptideInferenceColorMap, peptideInferenceTooltipMap));
        peptideTable.getColumn("Confidence").setCellRenderer(new JSparklinesBarChartTableCellRenderer(PlotOrientation.HORIZONTAL, 100.0, peptideShakerGUI.getSparklineColor()));
        peptideTable.getColumn("#Spectra").setCellRenderer(new JSparklinesBarChartTableCellRenderer(PlotOrientation.HORIZONTAL, 100.0, peptideShakerGUI.getSparklineColor()));
        ((JSparklinesBarChartTableCellRenderer) peptideTable.getColumn("Confidence").getCellRenderer()).showNumberAndChart(
                true, TableProperties.getLabelWidth() - 20, peptideShakerGUI.getScoreAndConfidenceDecimalFormat());
        peptideTable.getColumn("Score").setCellRenderer(new JSparklinesBarChartTableCellRenderer(PlotOrientation.HORIZONTAL, 100.0, peptideShakerGUI.getSparklineColor()));
        ((JSparklinesBarChartTableCellRenderer) peptideTable.getColumn("Score").getCellRenderer()).showNumberAndChart(
                true, TableProperties.getLabelWidth() - 20, peptideShakerGUI.getScoreAndConfidenceDecimalFormat());
        ((JSparklinesBarChartTableCellRenderer) peptideTable.getColumn("#Spectra").getCellRenderer()).showNumberAndChart(true, TableProperties.getLabelWidth() + 5);
        peptideTable.getColumn("S").setCellRenderer(new TrueFalseIconRenderer(
                new ImageIcon(this.getClass().getResource("/icons/star_yellow.png")),
                new ImageIcon(this.getClass().getResource("/icons/star_grey.png")),
                new ImageIcon(this.getClass().getResource("/icons/star_grey.png")),
                "Starred", null, null));
        peptideTable.getColumn("H").setCellRenderer(new NimbusCheckBoxRenderer());

        ((JSparklinesBarChartTableCellRenderer) peptideTable.getColumn("#Spectra").getCellRenderer()).setMaxValue(peptideShakerGUI.getMetrics().getMaxNSpectra()); // @TODO: this is not the correct max value

        psmTable.getColumn("S").setCellRenderer(new TrueFalseIconRenderer(
                new ImageIcon(this.getClass().getResource("/icons/star_yellow.png")),
                new ImageIcon(this.getClass().getResource("/icons/star_grey.png")),
                new ImageIcon(this.getClass().getResource("/icons/star_grey.png")),
                "Starred", null, null));
        psmTable.getColumn("H").setCellRenderer(new NimbusCheckBoxRenderer());
View Full Code Here
281
282
283
284
285
286
287
288
289
290
291
        proteinTable.getColumn("Coverage").setCellRenderer(new JSparklinesTwoValueBarChartTableCellRenderer(PlotOrientation.HORIZONTAL, 100.0,
                peptideShakerGUI.getSparklineColor(), peptideShakerGUI.getUtilitiesUserPreferences().getSparklineColorNotFound(), true));
        ((JSparklinesTwoValueBarChartTableCellRenderer) proteinTable.getColumn("Coverage").getCellRenderer()).showNumberAndChart(true, TableProperties.getLabelWidth(), new DecimalFormat("0.00"));
        proteinTable.getColumn("").setCellRenderer(new JSparklinesIntegerIconTableCellRenderer(MatchValidationLevel.getIconMap(this.getClass()), MatchValidationLevel.getTooltipMap()));
        proteinTable.getColumn("  ").setCellRenderer(new TrueFalseIconRenderer(
                new ImageIcon(this.getClass().getResource("/icons/star_yellow.png")),
                new ImageIcon(this.getClass().getResource("/icons/star_grey.png")),
                new ImageIcon(this.getClass().getResource("/icons/star_grey.png")),
                "Starred", null, null));
View Full Code Here
379
380
381
382
383
384
385
386
387
388
389
        sparklineColors.add(peptideShakerGUI.getUtilitiesUserPreferences().getSparklineColorDoubtful());
        sparklineColors.add(nonValidatedColor);
        peptideTable.getColumn("#Spectra").setCellRenderer(new JSparklinesArrayListBarChartTableCellRenderer(PlotOrientation.HORIZONTAL, 10.0, sparklineColors, JSparklinesArrayListBarChartTableCellRenderer.ValueDisplayType.sumOfNumbers));
        ((JSparklinesArrayListBarChartTableCellRenderer) peptideTable.getColumn("#Spectra").getCellRenderer()).showNumberAndChart(true, TableProperties.getLabelWidth(), new DecimalFormat("0"));
        peptideTable.getColumn("").setCellRenderer(new JSparklinesIntegerIconTableCellRenderer(MatchValidationLevel.getIconMap(this.getClass()), MatchValidationLevel.getTooltipMap()));
        peptideTable.getColumn("  ").setCellRenderer(new TrueFalseIconRenderer(
                new ImageIcon(this.getClass().getResource("/icons/star_yellow.png")),
                new ImageIcon(this.getClass().getResource("/icons/star_grey.png")),
                new ImageIcon(this.getClass().getResource("/icons/star_grey.png")),
                "Starred", null, null));
View Full Code Here
458
459
460
461
462
463
464
465
466
467
468
        ((JSparklinesBarChartTableCellRenderer) psmTable.getColumn("Mass Error").getCellRenderer()).showNumberAndChart(true, TableProperties.getLabelWidth());
        psmTable.getColumn("Charge").setCellRenderer(new JSparklinesBarChartTableCellRenderer(PlotOrientation.HORIZONTAL,
                (double) ((PSMaps) peptideShakerGUI.getIdentification().getUrParam(new PSMaps())).getPsmSpecificMap().getMaxCharge(), peptideShakerGUI.getSparklineColor()));
        ((JSparklinesBarChartTableCellRenderer) psmTable.getColumn("Charge").getCellRenderer()).showNumberAndChart(true, TableProperties.getLabelWidth() - 30);
        psmTable.getColumn("").setCellRenderer(new JSparklinesIntegerIconTableCellRenderer(MatchValidationLevel.getIconMap(this.getClass()), MatchValidationLevel.getTooltipMap()));
        psmTable.getColumn("  ").setCellRenderer(new TrueFalseIconRenderer(
                new ImageIcon(this.getClass().getResource("/icons/star_yellow.png")),
                new ImageIcon(this.getClass().getResource("/icons/star_grey.png")),
                new ImageIcon(this.getClass().getResource("/icons/star_grey.png")),
                "Starred", null, null));
View Full Code Here
82
83
84
85
86
87
88
89
90
91
92
93
94
95
        neutralLossesTable.getColumn("  ").setMinWidth(30);

        chargesTable.getColumn("  ").setCellRenderer(new NimbusCheckBoxRenderer());
        neutralLossesTable.getColumn("  ").setCellRenderer(new NimbusCheckBoxRenderer());

        chargesTable.getColumn("  ").setCellRenderer(new TrueFalseIconRenderer(
                new ImageIcon(this.getClass().getResource("/icons/selected_green.png")),
                null,
                "Selected", null));
        neutralLossesTable.getColumn("  ").setCellRenderer(new TrueFalseIconRenderer(
                new ImageIcon(this.getClass().getResource("/icons/selected_green.png")),
                null,
                "Selected", null));
    }
View Full Code Here
455
456
457
458
459
460
461
462
463
464
465
        // Quality filters
        final DefaultTableModel tableModel = new FiltersTableModel();
        qualityFiltersTable.setModel(tableModel);
        qualityFiltersTable.getColumn("").setMaxWidth(50);
        qualityFiltersTable.getColumn(" ").setMaxWidth(50);
        qualityFiltersTable.getColumn(" ").setCellRenderer(new TrueFalseIconRenderer(
                new ImageIcon(this.getClass().getResource("/icons/accept.png")),
                new ImageIcon(this.getClass().getResource("/icons/Error_3.png")),
                "Yes", "No"));

        int valid = 0;
View Full Code Here
TOP

Related Classes of no.uib.jsparklines.extra.TrueFalseIconRenderer

  • eu.isas.peptideshaker.gui.FindDialog
  • eu.isas.peptideshaker.gui.MatchValidationDialog
  • eu.isas.peptideshaker.gui.preferencesdialogs.AnnotationPreferencesDialog
  • eu.isas.peptideshaker.gui.pride.PrideReshakeGUI
  • eu.isas.peptideshaker.gui.protein_inference.ProteinInferenceDialog
  • eu.isas.peptideshaker.gui.tablemodels.ProteinTableModel
  • eu.isas.peptideshaker.gui.tabpanels.GOEAPanel
  • eu.isas.peptideshaker.gui.tabpanels.OverviewPanel
  • eu.isas.peptideshaker.gui.tabpanels.ProteinFractionsPanel
  • eu.isas.peptideshaker.gui.tabpanels.ProteinStructurePanel
    • Copyright © 2018 www.massapicom. All rights reserved.
    All source code are property of their respective owners. Java is a trademark of Sun Microsystems, Inc and owned by ORACLE Inc. Contact coftware#gmail.com.