Package net.sf.cram.stats

Examples of net.sf.cram.stats.CompressionHeaderFactory$BitCode


      long globalRecordCounter, SubstitutionMatrix substitutionMatrix,
      boolean AP_delta) throws IllegalArgumentException,
      IllegalAccessException, IOException {
    // get stats, create compression header and slices
    long time1 = System.nanoTime();
    CompressionHeader h = new CompressionHeaderFactory().build(records,
        substitutionMatrix);
    h.AP_seriesDelta = AP_delta;
    long time2 = System.nanoTime();

    h.readNamesIncluded = preserveReadNames;
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