Package net.sf.cram.structure

Examples of net.sf.cram.structure.SubstitutionMatrix

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                byte base = s.getBase();
                freqs[refBase][base]++;
              }
        }

        h.substitutionMatrix = new SubstitutionMatrix(freqs);
      } else h.substitutionMatrix = substitutionMatrix ;

      HuffmanParamsCalculator calculator = new HuffmanParamsCalculator();
      for (CramRecord r : records)
        if (r.getReadFeatures() == null)
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Related Classes of net.sf.cram.structure.SubstitutionMatrix

  • net.sf.cram.stats.CompressionHeaderFactory
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