Examples of net.sf.cram.io.DefaultBitInputStream

net.sf.cram.io.DefaultBitInputStream
Must not read from delegate unless no bits left in the buffer!!! @author vadim


    bos.close();
    long time2 = System.nanoTime();


    ByteArrayInputStream bais = new ByteArrayInputStream(baos.toByteArray());
    DefaultBitInputStream bis = new DefaultBitInputStream(bais);


    long time3 = System.nanoTime();
    int counter = 0;
    for (int i = 0; i < size; i++) {
      for (int b : cal.values()) {

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    bos.close();
    long time2 = System.nanoTime();


    ByteArrayInputStream bais = new ByteArrayInputStream(baos.toByteArray());
    DefaultBitInputStream bis = new DefaultBitInputStream(bais);


    long time3 = System.nanoTime();
    int counter = 0;
    for (int i = 0; i < size; i++) {
      for (int b : cal.values()) {

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      inputMap.put(exId, new ByteArrayInputStream(s.external.get(exId)
          .getRawContent()));
    }


    long time = 0;
    Reader reader = f.buildReader(new DefaultBitInputStream(
        new ByteArrayInputStream(s.coreBlock.getRawContent())),
        inputMap, h, s.sequenceId);


    List<CramRecord> records = new ArrayList<CramRecord>();

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