Examples of net.imglib2.transform.integer.SlicingTransform

net.imglib2.exception.IncompatibleTypeException
Map the components of the source vector to a slice of the target space, for instance transform (x,y) to (x,C,y) where C is a constant.
A {@link SlicingTransform} transform a n-dimensional source vector to am-dimensional target vector, where m >= n. It can be represented as a m+1 × n+1 homogeneous matrix. The {@link SlicingTransform} can be decomposed as follows:
1. component permutation
2. project up & position (add constant components in the target vector)
The component permutation step is implemented by the {@link #setComponentMapping(int[]) component mapping}. This is a lookup array that specifies for each target dimension from which source dimension it is taken. Note, that it is not allowed to set this array such that a source component is mapped to several target components!
@author Tobias Pietzsch

  }


  @Override
  public FlatIterationOrder iterationOrder()
  {
    return new FlatIterationOrder( this );
  }

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   * {@inheritDoc}
   */
  @Override
  public Object subIntervalIterationOrder( final Interval interval )
  {
    return new FlatIterationOrder( interval );
  }

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  public Object subIntervalIterationOrder( final Interval interval )
  {
    if ( this.sourceInterval instanceof SubIntervalIterable )
      return ( ( SubIntervalIterable< T > ) this.sourceInterval ).subIntervalIterationOrder( interval );
    else
      return new FlatIterationOrder( interval );
  }

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        }


        if ( optimizable )
        {
//          System.out.println( "interval = " + Util.printInterval( interval ) );
          final Interval sliceInterval = t.transform( new BoundingBox( interval ) ).getInterval();
//          System.out.println( "transformed interval = " + Util.printInterval( sliceInterval ) );
          if ( iterableSource.supportsOptimizedCursor( sliceInterval ) )
          {
            // check for FlatIterationOrder
            boolean flat = FlatIterationOrder.class.isInstance( iterableSource.subIntervalIterationOrder( sliceInterval ) );

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  @Override
  protected SignedByteDataBuffer createDataBuffer( final ByteArray data )
  {
    final byte[] sourceArray = data.getCurrentStorageArray();
    return new SignedByteDataBuffer( sourceArray, sourceArray.length );
  }

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  @Override
  protected SignedShortDataBuffer createDataBuffer( final ShortArray data )
  {
    final short[] sourceArray = data.getCurrentStorageArray();
    return new SignedShortDataBuffer( sourceArray, sourceArray.length );
  }

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  @Override
  protected UnsignedIntDataBuffer createDataBuffer( final IntArray data )
  {
    final int[] sourceArray = data.getCurrentStorageArray();
    return new UnsignedIntDataBuffer( sourceArray, sourceArray.length );
  }

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  @Override
  public < S > ImgFactory< S > imgFactory( final S type ) throws IncompatibleTypeException
  {
    if ( NativeType.class.isInstance( type ) )
      return new CellImgFactory( defaultCellDimensions );
    throw new IncompatibleTypeException( this, type.getClass().getCanonicalName() + " does not implement NativeType." );
  }

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  @Override
  public < S > ImgFactory< S > imgFactory( final S type ) throws IncompatibleTypeException
  {
    if ( NativeType.class.isInstance( type ) )
      return new PlanarImgFactory();
    throw new IncompatibleTypeException( this, type.getClass().getCanonicalName() + " does not implement NativeType." );
  }

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  @Override
  public < S > ImgFactory< S > imgFactory( final S type ) throws IncompatibleTypeException
  {
    if ( NativeType.class.isInstance( type ) )
      return new NtreeImgFactory();
    throw new IncompatibleTypeException( this, type.getClass().getCanonicalName() + " does not implement NativeType." );
  }

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net.imglib2.FinalInterval

net.imglib2.FlatIterationOrder

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