Package net.imglib2.img.cell

Source Code of net.imglib2.img.cell.CellImgFactory

/*
* #%L
* ImgLib2: a general-purpose, multidimensional image processing library.
* %%
* Copyright (C) 2009 - 2014 Stephan Preibisch, Tobias Pietzsch, Barry DeZonia,
* Stephan Saalfeld, Albert Cardona, Curtis Rueden, Christian Dietz, Jean-Yves
* Tinevez, Johannes Schindelin, Lee Kamentsky, Larry Lindsey, Grant Harris,
* Mark Hiner, Aivar Grislis, Martin Horn, Nick Perry, Michael Zinsmaier,
* Steffen Jaensch, Jan Funke, Mark Longair, and Dimiter Prodanov.
* %%
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
*
* 1. Redistributions of source code must retain the above copyright notice,
*    this list of conditions and the following disclaimer.
* 2. Redistributions in binary form must reproduce the above copyright notice,
*    this list of conditions and the following disclaimer in the documentation
*    and/or other materials provided with the distribution.
*
* THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
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* IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
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package net.imglib2.img.cell;

import net.imglib2.exception.IncompatibleTypeException;
import net.imglib2.img.ImgFactory;
import net.imglib2.img.basictypeaccess.array.ArrayDataAccess;
import net.imglib2.img.basictypeaccess.array.ByteArray;
import net.imglib2.img.basictypeaccess.array.CharArray;
import net.imglib2.img.basictypeaccess.array.DoubleArray;
import net.imglib2.img.basictypeaccess.array.FloatArray;
import net.imglib2.img.basictypeaccess.array.IntArray;
import net.imglib2.img.basictypeaccess.array.LongArray;
import net.imglib2.img.basictypeaccess.array.ShortArray;
import net.imglib2.type.NativeType;
import net.imglib2.util.Fraction;

/**
* Factory for creating {@link CellImg CellImgs}. The cell dimensions for a
* standard cell can be supplied in the constructor of the factory. If no cell
* dimensions are given, the factory creates cells of size
* <em>10 x 10 x ... x 10</em>.
*
* @author ImgLib2 developers
* @author Tobias Pietzsch <tobias.pietzsch@gmail.com>
*/
public final class CellImgFactory< T extends NativeType< T > > extends AbstractCellImgFactory< T >
{
  public CellImgFactory()
  {}

  public CellImgFactory( final int cellSize )
  {
    super( cellSize );
  }

  public CellImgFactory( final int[] cellDimensions )
  {
    super( cellDimensions );
  }

  @SuppressWarnings( "unchecked" )
  @Override
  public CellImg< T, ?, ? > create( final long[] dim, final T type )
  {
    return ( CellImg< T, ?, ? > ) type.createSuitableNativeImg( this, dim );
  }

  @Override
  public CellImg< T, ByteArray, DefaultCell< ByteArray > > createByteInstance( final long[] dimensions, final Fraction entitiesPerPixel )
  {
    return createInstance( new ByteArray( 1 ), dimensions, entitiesPerPixel );
  }

  @Override
  public CellImg< T, CharArray, DefaultCell< CharArray > > createCharInstance( final long[] dimensions, final Fraction entitiesPerPixel )
  {
    return createInstance( new CharArray( 1 ), dimensions, entitiesPerPixel );
  }

  @Override
  public CellImg< T, ShortArray, DefaultCell< ShortArray > > createShortInstance( final long[] dimensions, final Fraction entitiesPerPixel )
  {
    return createInstance( new ShortArray( 1 ), dimensions, entitiesPerPixel );
  }

  @Override
  public CellImg< T, IntArray, DefaultCell< IntArray > > createIntInstance( final long[] dimensions, final Fraction entitiesPerPixel )
  {
    return createInstance( new IntArray( 1 ), dimensions, entitiesPerPixel );
  }

  @Override
  public CellImg< T, LongArray, DefaultCell< LongArray > > createLongInstance( final long[] dimensions, final Fraction entitiesPerPixel )
  {
    return createInstance( new LongArray( 1 ), dimensions, entitiesPerPixel );
  }

  @Override
  public CellImg< T, FloatArray, DefaultCell< FloatArray > > createFloatInstance( final long[] dimensions, final Fraction entitiesPerPixel )
  {
    return createInstance( new FloatArray( 1 ), dimensions, entitiesPerPixel );
  }

  @Override
  public CellImg< T, DoubleArray, DefaultCell< DoubleArray > > createDoubleInstance( final long[] dimensions, final Fraction entitiesPerPixel )
  {
    return createInstance( new DoubleArray( 1 ), dimensions, entitiesPerPixel );
  }

  @SuppressWarnings( { "unchecked", "rawtypes" } )
  @Override
  public < S > ImgFactory< S > imgFactory( final S type ) throws IncompatibleTypeException
  {
    if ( NativeType.class.isInstance( type ) )
      return new CellImgFactory( defaultCellDimensions );
    throw new IncompatibleTypeException( this, type.getClass().getCanonicalName() + " does not implement NativeType." );
  }

  private < A extends ArrayDataAccess< A > > CellImg< T, A, DefaultCell< A > > createInstance( final A array, long[] dimensions, final Fraction entitiesPerPixel )
  {
    dimensions = checkDimensions( dimensions );
    final int[] cellSize = checkCellSize( defaultCellDimensions, dimensions );
    return new CellImg< T, A, DefaultCell< A > >( this, new ListImgCells< A >( array, entitiesPerPixel, dimensions, cellSize ) );
  }
}
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