Package net.imglib2.meta

Examples of net.imglib2.meta.TypedAxis

100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
      return ( ArrayImgAWTScreenImage ) container;
    }

    if ( ShortType.class.isAssignableFrom( type.getClass() ) )
    {
      final ShortArray array = new ShortArray( numElements( dims ) );
      final ArrayImgAWTScreenImage< ShortType, ShortArray > container = new ShortAWTScreenImage( new ShortType( array ), array, dims );
      container.setLinkedType( new ShortType( container ) );
      return ( ArrayImgAWTScreenImage ) container;
    }

    if ( UnsignedShortType.class.isAssignableFrom( type.getClass() ) )
    {
      final ShortArray array = new ShortArray( numElements( dims ) );
      final ArrayImgAWTScreenImage< UnsignedShortType, ShortArray > container = new UnsignedShortAWTScreenImage( new UnsignedShortType( array ), array, dims );
      container.setLinkedType( new UnsignedShortType( container ) );
      return ( ArrayImgAWTScreenImage ) container;
    }
View Full Code Here
66
67
68
69
70
71
72
73
  // this is the constructor if you want it to be a variable
  public GenericShortType( final short value )
  {
    img = null;
    dataAccess = new ShortArray( 1 );
    setValue( value );
  }
View Full Code Here
90
91
92
93
94
95
96
  }

  @Override
  public CellImg< T, ShortArray, DefaultCell< ShortArray > > createShortInstance( final long[] dimensions, final Fraction entitiesPerPixel )
  {
    return createInstance( new ShortArray( 1 ), dimensions, entitiesPerPixel );
  }
View Full Code Here
104
105
106
107
108
109
110
  }

  @Override
  public NativeImg< T, ShortArray > createShortInstance( final long[] dimensions, final Fraction entitiesPerPixel )
  {
    return new PlanarImg< T, ShortArray >( new ShortArray( 1 ), dimensions, entitiesPerPixel );
  }
View Full Code Here
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
    pixels.setSizeX(xSize);
    pixels.setSizeY(ySize);
    setDimensionOrder(this, pixels);
    int nPlanes = 1;
    for (int axisIdx=0; axisIdx<numDimensions(); axisIdx++) {
      TypedAxis a = axis(axisIdx);
      final PositiveInteger size = new PositiveInteger(size(axisIdx));
      if (a.type().equals(Axes.Z)) {
        pixels.setSizeZ(size);
      } else if (a.type().equals(Axes.CHANNEL)) {
        pixels.setSizeC(size);
      } else {
        // Both T and ObjectPlane go here
        pixels.setSizeT(size);
      }
View Full Code Here
271
272
273
274
275
276
277
278
279
280
281
        }

        if ( optimizable )
        {
//          System.out.println( "interval = " + Util.printInterval( interval ) );
          final Interval sliceInterval = t.transform( new BoundingBox( interval ) ).getInterval();
//          System.out.println( "transformed interval = " + Util.printInterval( sliceInterval ) );
          if ( iterableSource.supportsOptimizedCursor( sliceInterval ) )
          {
            // check for FlatIterationOrder
            boolean flat = FlatIterationOrder.class.isInstance( iterableSource.subIntervalIterationOrder( sliceInterval ) );
View Full Code Here
298
299
300
301
302
303
304
305
306
307
      else
      {
        component[ e ] = e;
      }
    }
    final MixedTransform t = new MixedTransform( n, n );
    t.setComponentMapping( component );
    t.setComponentInversion( inv );
    return new MixedTransformView< T >( randomAccessible, t );
  }
View Full Code Here
346
347
348
349
350
351
352
353
354
    final int[] component = new int[ n ];
    for ( int e = 0; e < n; ++e )
      component[ e ] = e;
    component[ fromAxis ] = toAxis;
    component[ toAxis ] = fromAxis;
    final MixedTransform t = new MixedTransform( n, n );
    t.setComponentMapping( component );
    return new MixedTransformView< T >( randomAccessible, t );
  }
View Full Code Here
389
390
391
392
393
394
395
396
397
   *            resulting view.
   */
  public static < T > MixedTransformView< T > translate( final RandomAccessible< T > randomAccessible, final long... translation )
  {
    final int n = randomAccessible.numDimensions();
    final MixedTransform t = new MixedTransform( n, n );
    t.setInverseTranslation( translation );
    return new MixedTransformView< T >( randomAccessible, t );
  }
View Full Code Here
434
435
436
437
438
439
440
441
442
   *            origin of resulting view.
   */
  public static < T > MixedTransformView< T > offset( final RandomAccessible< T > randomAccessible, final long... offset )
  {
    final int n = randomAccessible.numDimensions();
    final MixedTransform t = new MixedTransform( n, n );
    t.setTranslation( offset );
    return new MixedTransformView< T >( randomAccessible, t );
  }
View Full Code Here
TOP

Related Classes of net.imglib2.meta.TypedAxis

  • Jama.Matrix
  • net.imglib2.display.ARGBScreenImageExpectationChecking
  • net.imglib2.display.projector.composite.CompositeXYProjector
  • net.imglib2.display.projector.composite.CompositeXYRandomAccessibleProjector
  • net.imglib2.display.screenimage.awt.ARGBScreenImage
  • net.imglib2.display.screenimage.awt.AWTScreenImageUtil
  • net.imglib2.FinalInterval
  • net.imglib2.FlatIterationOrder
  • net.imglib2.histogram.Histogram1dTest
  • net.imglib2.histogram.HistogramNdTest
    • Copyright © 2018 www.massapicom. All rights reserved.
    All source code are property of their respective owners. Java is a trademark of Sun Microsystems, Inc and owned by ORACLE Inc. Contact coftware#gmail.com.