Package javax.vecmath

Examples of javax.vecmath.Point4f

14719
14720
14721
14722
14723
14724
14725
14726
14727
14728
14729
      throws ScriptException {
    Object data = null;
    if (sb != null)
      sb.append(" ").append(getToken(i).value).append(" ");
    int tok = tokAt(i + 1);
    Point4f plane = null;
    switch (tok) {
    case Token.within:
      i++;
      data = getPointArray(++i, 4);
      break;
View Full Code Here
15761
15762
15763
15764
15765
15766
15767
15768
15769
15770
15771
        boolean isInline = name.equals("inline");
        vxy.add(name); // (0) = name
        Point3f pt3 = getPoint3f(i, false);
        sbCommand.append(" ").append(Escape.escape(pt3));
        vxy.add(pt3); // (1) = {origin}
        Point4f pt4;
        ptX = ++iToken;
        vxy.add(pt4 = getPoint4f(ptX)); // (2) = {ni ix iy iz}
        sbCommand.append(" ").append(Escape.escape(pt4));
        nX = (int) pt4.x;
        ptY = ++iToken;
View Full Code Here
213
214
215
216
217
218
219
220
221
222
223
        if (Float.isNaN(params.scale3d))
          params.scale3d = 0;
      } catch (Exception e) {
        Logger
            .error("Error reading 4 floats for PLANE definition -- setting to 0 0 1 0  (z=0)");
        params.thePlane = new Point4f(0, 0, 1, 0);
      }
      surfaceDataCount = 0;
      edgeDataCount = 0;
    } else {
      params.thePlane = null;
View Full Code Here
61
62
63
64
65
66
67
68
69
70
71
    float cutoff = Float.NaN;
    boolean isPositiveOnly = false;

    String phase = null;
    Point4f plane = null;

    String colorScheme = null;
    boolean bicolor = false;
    boolean reverseColor = false;
    float min = Float.NaN;
View Full Code Here
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
    }
  }
 
  static Point4f getPlane(String str) {
    if (str.equalsIgnoreCase("xy"))
      return new Point4f(0, 0, 1, 0);
    if (str.equalsIgnoreCase("xz"))
      return new Point4f(0, 1, 0, 0);
    if (str.equalsIgnoreCase("yz"))
      return new Point4f(1, 0, 0, 0);
    if (str.indexOf("x=") == 0) {
      return new Point4f(1, 0, 0, -Parser.parseFloat(str.substring(2)));
    }
    if (str.indexOf("y=") == 0) {
      return new Point4f(0, 1, 0, -Parser.parseFloat(str.substring(2)));
    }
    if (str.indexOf("z=") == 0) {
      return new Point4f(0, 0, 1, -Parser.parseFloat(str.substring(2)));
    }
    if (str.indexOf("{") == 0) {
      str = str.replace(',', ' ');
      int[] next = new int[1];
      return new Point4f(Parser.parseFloat(str, next), Parser.parseFloat(str,
          next), Parser.parseFloat(str, next), Parser.parseFloat(str, next));
    }
    return null;
  }
View Full Code Here
199
200
201
202
203
204
205
  public static Point4f getPlaneThroughPoints(Point3f pointA,
                                              Point3f pointB,
                                              Point3f pointC, Vector3f vNorm,
                                              Vector3f vAB, Vector3f vAC) {
    float w = getNormalThroughPoints(pointA, pointB, pointC, vNorm, vAB, vAC);
    return new Point4f(vNorm.x, vNorm.y, vNorm.z, w);
  }
View Full Code Here
203
204
205
206
207
208
209
    float w = getNormalThroughPoints(pointA, pointB, pointC, vNorm, vAB, vAC);
    return new Point4f(vNorm.x, vNorm.y, vNorm.z, w);
  }
 
  public static Point4f getPlaneThroughPoint(Point3f pt, Vector3f normal) {
    return new Point4f(normal.x, normal.y, normal.z, -normal.dot(new Vector3f(pt)));
  }
View Full Code Here
549
550
551
552
553
554
555
556
557
558
    N[3][3] = -Sxx - Syy + Szz;

    Eigen eigen = new Eigen(N);

    float[] v = eigen.getEigenvectorsFloatTransposed()[3];
    q = new Quaternion(new Point4f(v[1], v[2], v[3], v[0]));
    retStddev[1] = getRmsd(centerAndPoints, q);
    // System.out.println("Measure" + q.getInfo());
    return q;
  }
View Full Code Here
102
103
104
105
106
107
108
109
110
111
112
      boolean isInA = bsA.get(myN3.index);
      if (!isInA && !bsB.get(myN3.index))
        continue;
      Atom myN1 = myNucleotide.getN1();
      Atom myN9 = myNucleotide.getN0();
      Point4f plane = Measure.getPlaneThroughPoints(myN3, myN1, myN9, vNorm,
          vAB, vAC);
      Atom bestN3 = null;
      float minDist2 = 25;
      NucleicMonomer bestNucleotide = null;
      for (int j = other.monomerCount; --j >= 0;) {
View Full Code Here
806
807
808
809
810
811
812
813
814
815
816
    }

    if ("functionXY" == propertyName) {
      params.setFunctionXY((List) value);
      if (params.isContoured)
        volumeData.setPlaneParameters(new Point4f(0, 0, 1, 0)); // xy plane
                                                                // through
                                                                // origin
      if (((String) params.functionXYinfo.get(0)).indexOf("_xyz") >= 0)
        getFunctionZfromXY();
      processState();
View Full Code Here
TOP

Related Classes of javax.vecmath.Point4f

  • org.jmol.jvxl.readers.IsoFxyReader
  • org.jmol.jvxl.readers.IsoFxyzReader
  • org.jmol.jvxl.readers.JvxlReader
  • org.jmol.jvxl.readers.JvxlXmlReader
  • org.jmol.jvxl.readers.Parameters
  • org.jmol.jvxl.readers.SurfaceGenerator
  • org.jmol.modelsetbio.NucleicPolymer
  • org.jmol.script.ScriptEvaluator
  • org.jmol.script.ScriptMathProcessor
  • org.jmol.shapesurface.Isosurface
    • Copyright © 2018 www.massapicom. All rights reserved.
    All source code are property of their respective owners. Java is a trademark of Sun Microsystems, Inc and owned by ORACLE Inc. Contact coftware#gmail.com.