Examples of IOntologyError

edu.pitt.dbmi.nlp.noble.ontology.IOntologyError
exception caused for whatever reason, unhandled wraps other exceptions @author tseytlin
edu.pitt.ontology.IOntologyError
exception caused for whatever reason, unhandled wraps other exceptions @author tseytlin

Examples of edu.pitt.dbmi.nlp.noble.ontology.IOntologyError


  public void addPropertyValue(IProperty prop, Object value) {
    if(prop.isAnnotationProperty()){
      addAxiom(getAnnotationAxiom((OWLAnnotationProperty)convertOntologyObject(prop),(OWLAnnotationValue)convertOntologyObject(value)));
    }else
      throw new IOntologyError("Not implemented for "+getClass().getName());
  }

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Examples of edu.pitt.dbmi.nlp.noble.ontology.IOntologyError

  public void setPropertyValue(IProperty prop, Object value) {
    if(prop.isAnnotationProperty()){
      removePropertyValues(prop);
      addPropertyValue(prop, value);
    }else
      throw new IOntologyError("Not implemented for "+getClass().getName());
  }

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Examples of edu.pitt.dbmi.nlp.noble.ontology.IOntologyError

      removePropertyValues(prop);
      for(Object o: values){
        addPropertyValue(prop,o);
      }
    }else
      throw new IOntologyError("Not implemented for "+getClass().getName());
  }

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Examples of edu.pitt.dbmi.nlp.noble.ontology.IOntologyError

  public void addVersion(String version) {
    getList(VERSIONS).add(version);
  }


  public void delete() {
    throw new IOntologyError("Read-Only Ontology");
  }

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Examples of edu.pitt.dbmi.nlp.noble.ontology.IOntologyError

    loaded = false;
    concept = null;
  }
  
  public void addDisjointClass(IClass a) {
    throw new IOntologyError("Operation Not Supported");
  }

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Examples of edu.pitt.dbmi.nlp.noble.ontology.IOntologyError

  public void addDisjointClass(IClass a) {
    throw new IOntologyError("Operation Not Supported");
  }


  public void addEquivalentClass(IClass a) {
    throw new IOntologyError("Operation Not Supported");  }

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Examples of edu.pitt.dbmi.nlp.noble.ontology.IOntologyError


  public void addEquivalentClass(IClass a) {
    throw new IOntologyError("Operation Not Supported");  }


  public void addEquivalentRestriction(IRestriction restriction) {
    throw new IOntologyError("Operation Not Supported");
  }

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Examples of edu.pitt.dbmi.nlp.noble.ontology.IOntologyError

  public void addEquivalentRestriction(IRestriction restriction) {
    throw new IOntologyError("Operation Not Supported");
  }


  public void addNecessaryRestriction(IRestriction restriction) {
    throw new IOntologyError("Operation Not Supported");
  }

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Examples of edu.pitt.dbmi.nlp.noble.ontology.IOntologyError

    try{
      Object [] o = ontology.convertGetValues(
          reasoner.getEquivalentClasses((OWLClass)ontology.convertSetValue(cls)));
      return (o.length > 0)?(IClass [])o:new IClass[0];
    }catch(ProtegeReasonerException ex){
      throw new IOntologyError("Reasoner Problem",ex);
    }
    //return new IClass[0];
  }

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Examples of edu.pitt.dbmi.nlp.noble.ontology.IOntologyError

    try{
      Object [] o = ontology.convertGetValues(
          reasoner.getIndividualsBelongingToClass((OWLClass)ontology.convertSetValue(cls)));
      return (o.length > 0)?(IInstance [])o:new IInstance[0];
    }catch(ProtegeReasonerException ex){
      throw new IOntologyError("Reasoner Problem",ex);
    }
    //return new IInstance[0];
  }

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