Package edu.pitt.dbmi.nlp.noble.ontology

Examples of edu.pitt.dbmi.nlp.noble.ontology.IOntologyError

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      List<IResult> result = new ArrayList<IResult>();
      result.addAll(computeResults(c,reasoner.getSuperclasses(c),IResult.SUPERCLASS));
      //result.addAll(computeResults(c,reasoner.getSubclasses(c),IResult.SUBCLASS));
      return result.toArray(new IResult[0]);
    }catch(Exception ex){
      throw new IOntologyError("Reasoner Problem",ex);
    }
  }
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    try{
      Object [] o = ontology.convertGetValues(
          reasoner.getSubclasses((OWLClass)ontology.convertSetValue(cls)));
      return (o.length > 0)?(IClass [])o:new IClass[0];
    }catch(ProtegeReasonerException ex){
      throw new IOntologyError("Reasoner Problem",ex);
    }
    //return new IClass[0];
  }
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    try{
      Object [] o = ontology.convertGetValues(
          reasoner.getSuperclasses((OWLClass)ontology.convertSetValue(cls)));
      return (o.length > 0)?(IClass [])o:new IClass[0];
    }catch(ProtegeReasonerException ex){
      throw new IOntologyError("Reasoner Problem",ex);
    }
    //return new IClass[0];
  }
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  public void addNecessaryRestriction(IRestriction restriction) {
    throw new IOntologyError("Operation Not Supported");
  }

  public void addSubClass(IClass child) {
    throw new IOntologyError("Operation Not Supported");
  }
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  public void addSubClass(IClass child) {
    throw new IOntologyError("Operation Not Supported");
  }

  public void addSuperClass(IClass parent) {
    throw new IOntologyError("Operation Not Supported");
  }
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  public void addSuperClass(IClass parent) {
    throw new IOntologyError("Operation Not Supported");
  }

  public IInstance createInstance(String name) {
    throw new IOntologyError("Operation Not Supported");
  }
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  public IInstance createInstance(String name) {
    throw new IOntologyError("Operation Not Supported");
  }

  public IInstance createInstance() {
    throw new IOntologyError("Operation Not Supported");
  }
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  public IInstance createInstance() {
    throw new IOntologyError("Operation Not Supported");
  }

  public IClass createSubClass(String name) {
    throw new IOntologyError("Operation Not Supported");
  }
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  public boolean hasDisjointClass(IClass a) {
    return getClassList(DISJOINT_CLASS).contains(a);
  }

  public void removeDisjointClass(IClass a) {
    throw new IOntologyError("Operation Not Supported");

  }
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    throw new IOntologyError("Operation Not Supported");

  }

  public void removeEquivalentClass(IClass a) {
    throw new IOntologyError("Operation Not Supported");

  }
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Related Classes of edu.pitt.dbmi.nlp.noble.ontology.IOntologyError

  • edu.pitt.dbmi.nlp.noble.ontology.bioportal.BClass
  • edu.pitt.dbmi.nlp.noble.ontology.bioportal.BioPortalRepository
  • edu.pitt.dbmi.nlp.noble.ontology.bioportal.BOntology
  • edu.pitt.dbmi.nlp.noble.ontology.bioportal.BResource
  • edu.pitt.dbmi.nlp.noble.ontology.owl.OAnnotation
  • edu.pitt.dbmi.nlp.noble.ontology.owl.OOntology
  • edu.pitt.dbmi.nlp.noble.ontology.owl.OProperty
  • edu.pitt.dbmi.nlp.noble.ontology.owl.OResource
  • edu.pitt.dbmi.nlp.noble.ontology.protege.POntology
  • edu.pitt.dbmi.nlp.noble.ontology.protege.PReasoner
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