Package edu.pitt.dbmi.nlp.noble.ontology

Examples of edu.pitt.dbmi.nlp.noble.ontology.IOntologyError

135
136
137
138
139
140
141
142
143
    addAxiom(getOWLDataFactory().getOWLSubAnnotationPropertyOfAxiom(annotation,ch));
  }

  public void addSubProperty(IProperty p) {
    if(!p.isAnnotationProperty())
      throw new IOntologyError("Can't add non-annotation subproperty");
    OWLAnnotationProperty ch = (OWLAnnotationProperty) convertOntologyObject(p);
    addAxiom(getOWLDataFactory().getOWLSubAnnotationPropertyOfAxiom(ch,annotation));
  }
View Full Code Here
142
143
144
145
146
147
148
149
150
    addAxiom(getOWLDataFactory().getOWLSubAnnotationPropertyOfAxiom(ch,annotation));
  }

  public void removeSuperProperty(IProperty p) {
    if(!p.isAnnotationProperty())
      throw new IOntologyError("Can't remove non-annotation superproperty");
    OWLAnnotationProperty ch = (OWLAnnotationProperty) convertOntologyObject(p);
    removeAxiom(getOWLDataFactory().getOWLSubAnnotationPropertyOfAxiom(annotation,ch));
  }
View Full Code Here
149
150
151
152
153
154
155
156
157
    removeAxiom(getOWLDataFactory().getOWLSubAnnotationPropertyOfAxiom(annotation,ch));
  }

  public void removeSubProperty(IProperty p) {
    if(!p.isAnnotationProperty())
      throw new IOntologyError("Can't remove non-annotation subproperty");
    OWLAnnotationProperty ch = (OWLAnnotationProperty) convertOntologyObject(p);
    removeAxiom(getOWLDataFactory().getOWLSubAnnotationPropertyOfAxiom(ch,annotation));
  }
View Full Code Here
494
495
496
497
498
499
500
501
502
503
504
        if(exp.getExpressionType() == ILogicExpression.NOT){
          try{
            obj = model.createOWLComplementClass(
                (RDFSClass)convertSetValue(exp.getOperand()));
          }catch(ClassCastException ex){
            throw new IOntologyError("Cannot complement "+exp.getOperand()+", because it is not a class",ex);
          }
        }else
          obj =  convertSetValue(exp.getOperand());
      }else if(exp.getExpressionType() == ILogicExpression.AND){
        OWLIntersectionClass ac = model.createOWLIntersectionClass();
View Full Code Here
155
156
157
158
159
160
161
    OWLAnnotationProperty ch = (OWLAnnotationProperty) convertOntologyObject(p);
    removeAxiom(getOWLDataFactory().getOWLSubAnnotationPropertyOfAxiom(ch,annotation));
  }
 
  public void setTransitive(boolean b) {
    throw new IOntologyError("Not implemented");
  }
View Full Code Here
159
160
161
162
163
164
165
  public void setTransitive(boolean b) {
    throw new IOntologyError("Not implemented");
  }

  public void setFunctional(boolean b) {
    throw new IOntologyError("Not implemented");
  }
View Full Code Here
163
164
165
166
167
168
169
  public void setFunctional(boolean b) {
    throw new IOntologyError("Not implemented");
  }

  public void setSymmetric(boolean b) {
    throw new IOntologyError("Not implemented");
  }
View Full Code Here
56
57
58
59
60
61
62
63
64
65
66
            semanticTypes.put(tui,st);
            semanticTypes.put(sty,st);
          }
        }
      } catch (IOException e) {
        throw new IOntologyError("Unable to parse SemanticTypes file "+SEMANTIC_TYPES,e);
      }
     
    }
    return semanticTypes;
  }
View Full Code Here
127
128
129
130
131
132
133
134
        OWLNamedClass c = (OWLNamedClass) o;
        result.addAll(computeResults(c,c.getInferredSuperclasses(),IResult.SUPERCLASS));
      }
      return result.toArray(new IResult[0]);
    }catch(ProtegeReasonerException ex){
      throw new IOntologyError("Reasoner Problem",ex);
    }
  }
View Full Code Here
142
143
144
145
146
147
148
149
150
      for(Object o: ontology.getModel().getChangedInferredClasses()){
        OWLNamedClass cls = (OWLNamedClass) o;
        System.out.println("inferred types: "+cls);
      }
    }catch(ProtegeReasonerException ex){
      throw new IOntologyError("Reasoner Problem",ex);
    }
    return new IResult [0];
  }
View Full Code Here
TOP

Related Classes of edu.pitt.dbmi.nlp.noble.ontology.IOntologyError

  • edu.pitt.dbmi.nlp.noble.ontology.bioportal.BClass
  • edu.pitt.dbmi.nlp.noble.ontology.bioportal.BioPortalRepository
  • edu.pitt.dbmi.nlp.noble.ontology.bioportal.BOntology
  • edu.pitt.dbmi.nlp.noble.ontology.bioportal.BResource
  • edu.pitt.dbmi.nlp.noble.ontology.owl.OAnnotation
  • edu.pitt.dbmi.nlp.noble.ontology.owl.OOntology
  • edu.pitt.dbmi.nlp.noble.ontology.owl.OProperty
  • edu.pitt.dbmi.nlp.noble.ontology.owl.OResource
  • edu.pitt.dbmi.nlp.noble.ontology.protege.POntology
  • edu.pitt.dbmi.nlp.noble.ontology.protege.PReasoner
    • Copyright © 2018 www.massapicom. All rights reserved.
    All source code are property of their respective owners. Java is a trademark of Sun Microsystems, Inc and owned by ORACLE Inc. Contact coftware#gmail.com.