Package com.eaglegenomics.simlims.core

Examples of com.eaglegenomics.simlims.core.SecurityProfile

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public class IlluminaPool extends PoolImpl<LibraryDilution> {
  public static final String PREFIX = "IPO";
  private final String units = "nM";

  public IlluminaPool() {
    setSecurityProfile(new SecurityProfile());
    setPlatformType(PlatformType.ILLUMINA);
  }
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    setSecurityProfile(new SecurityProfile());
    setPlatformType(PlatformType.ILLUMINA);
  }

  public IlluminaPool(User user) {
    setSecurityProfile(new SecurityProfile(user));
    setPlatformType(PlatformType.ILLUMINA);
  }
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public class ProjectImpl extends AbstractProject implements Serializable {
  /**
   * Construct a new Project with a default empty SecurityProfile
   */
  public ProjectImpl() {
    setSecurityProfile(new SecurityProfile());
  }
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   * Construct a new Project with a SecurityProfile owned by the given User
   *
   * @param user of type User
   */
  public ProjectImpl(User user) {
    setSecurityProfile(new SecurityProfile(user));
  }
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  /**
   * Construct a new Run with a default empty SecurityProfile
   */
  public RunImpl() {
    setSecurityProfile(new SecurityProfile());
  }
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   * Construct a new Run with a SecurityProfile owned by the given User
   *
   * @param user of type User
   */
  public RunImpl(User user) {
    setSecurityProfile(new SecurityProfile(user));
  }
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  public RunImpl(Experiment experiment, User user) {
    if (experiment.userCanRead(user)) {
      setSecurityProfile(experiment.getSecurityProfile());
    }
    else {
      setSecurityProfile(new SecurityProfile(user));
    }
  }
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  /**
   * Construct a new emPCR with a default empty SecurityProfile
   */
  public emPCR() {
    setSecurityProfile(new SecurityProfile());
  }
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   * Construct a new emPCR with a SecurityProfile owned by the given User
   *
   * @param user of type User
   */
  public emPCR(User user) {
    setSecurityProfile(new SecurityProfile(user));
  }
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      //creates a Study object and sets parameters
      Study s = dataObjectFactory.getStudy();
      s.setProject(p);
      s.setAlias("Submission Test Study");
      s.setDescription("A test of the Submission XML generation process");
      s.setSecurityProfile(new SecurityProfile());

      Document submissionDocument = null;
      try {
          DocumentBuilder docBuilder = DocumentBuilderFactory.newInstance().newDocumentBuilder();
          submissionDocument = docBuilder.newDocument();
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Related Classes of com.eaglegenomics.simlims.core.SecurityProfile

  • uk.ac.bbsrc.tgac.miso.core.data.impl.emPCR
  • uk.ac.bbsrc.tgac.miso.core.data.impl.emPCRDilution
  • uk.ac.bbsrc.tgac.miso.core.data.impl.emPCRPool
  • uk.ac.bbsrc.tgac.miso.core.data.impl.ExperimentImpl
  • uk.ac.bbsrc.tgac.miso.core.data.impl.illumina.IlluminaPool
  • uk.ac.bbsrc.tgac.miso.core.data.impl.illumina.IlluminaRun
  • uk.ac.bbsrc.tgac.miso.core.data.impl.Lane
  • uk.ac.bbsrc.tgac.miso.core.data.impl.LibraryDilution
  • uk.ac.bbsrc.tgac.miso.core.data.impl.LibraryImpl
  • uk.ac.bbsrc.tgac.miso.core.data.impl.ls454.LS454Pool
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