Package com.eaglegenomics.simlims.core

Examples of com.eaglegenomics.simlims.core.SecurityProfile


public class SolidRun extends RunImpl {

  public SolidRun() {
    setPlatformType(PlatformType.SOLID);
    setStatus(new StatusImpl());
    setSecurityProfile(new SecurityProfile());
  }
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  }

  public SolidRun(User user) {
    setPlatformType(PlatformType.SOLID);
    setStatus(new StatusImpl());
    setSecurityProfile(new SecurityProfile(user));
  }
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        }

        setPlatformType(PlatformType.SOLID);
        setStatus(new SolidStatus(statusXml));
        if (user != null) {
          setSecurityProfile(new SecurityProfile(user));
        }
        else {
          setSecurityProfile(new SecurityProfile());
        }
      }
      else {
        log.error("No status XML for this run");
      }
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public class PacBioPool extends PoolImpl<LibraryDilution> {
  public static final String PREFIX = "PPO";
  private final String units = "nM";

  public PacBioPool() {
    setSecurityProfile(new SecurityProfile());
    setPlatformType(PlatformType.PACBIO);
  }
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    setSecurityProfile(new SecurityProfile());
    setPlatformType(PlatformType.PACBIO);
  }

  public PacBioPool(User user) {
    setSecurityProfile(new SecurityProfile(user));
    setPlatformType(PlatformType.PACBIO);
  }
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  }

  public PacBioRun(User user) {
    setPlatformType(PlatformType.PACBIO);
    setStatus(new PacBioStatus());
    setSecurityProfile(new SecurityProfile(user));
  }
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  }

  public PacBioRun(String statusXml, User user) {
    setPlatformType(PlatformType.PACBIO);
    setStatus(new PacBioStatus(statusXml));
    setSecurityProfile(new SecurityProfile(user));
  }
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  public static final String PREFIX = "SPO";

  private final String units = "beads/&#181;l";

  public SolidPool() {
    setSecurityProfile(new SecurityProfile());
    setPlatformType(PlatformType.SOLID);
  }
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public class ExperimentImpl extends AbstractExperiment implements Serializable {
  /**
   * Construct a new Experiment with a default empty SecurityProfile
   */
  public ExperimentImpl() {
    setSecurityProfile(new SecurityProfile());
  }
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   * Construct a new Experiment with a SecurityProfile owned by the given User
   *
   * @param user of type User
   */
  public ExperimentImpl(User user) {
    setSecurityProfile(new SecurityProfile(user));
  }
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