PSParameter psParameter = new PSParameter();
psParameter = (PSParameter) peptideShakerGUI.getIdentification().getPeptideMatchParameter(peptideMatchKey, psParameter);
protInferenceTypeCmb.setSelectedIndex(psParameter.getProteinInferenceClass());
protInferenceTypeCmb.setRenderer(new AlignedListCellRenderer(SwingConstants.CENTER));
// make sure that the scroll panes are see-through
proteinsJScrollPane.getViewport().setOpaque(false);
otherProteinsJScrollPane.getViewport().setOpaque(false);