Package eu.isas.peptideshaker.gui.protein_inference

Examples of eu.isas.peptideshaker.gui.protein_inference.ProteinInferencePeptideLevelDialog

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                        // open the protein inference at the petide level dialog
                        if (column == peptidesTable.getColumn("PI").getModelIndex()) {
                            progressDialog.setRunFinished();
                            try {
                                String peptideKey = getSelectedPeptide(false);
                                new ProteinInferencePeptideLevelDialog(peptideShakerGUI, true, peptideKey, null);
                            } catch (Exception e) {
                                peptideShakerGUI.catchException(e);
                            }
                        } else if (column == peptidesTable.getColumn("PTM").getModelIndex()) {
                            if (peptidesTable.getValueAt(row, column) != null
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                        // open the protein inference at the petide level dialog
                        if (column == relatedPeptidesTable.getColumn("PI").getModelIndex()) {
                            try {
                                String peptideKey = getSelectedPeptide(true);
                                progressDialog.setRunFinished();
                                new ProteinInferencePeptideLevelDialog(peptideShakerGUI, true, peptideKey, null);
                            } catch (Exception e) {
                                peptideShakerGUI.catchException(e);
                            }
                        } else if (column == relatedPeptidesTable.getColumn("PTM").getModelIndex()) {
                            if (relatedPeptidesTable.getValueAt(row, column) != null
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                if (column == peptideTable.getColumn("PI").getModelIndex() && evt != null && evt.getButton() == MouseEvent.BUTTON1) {
                    SelfUpdatingTableModel tableModel = (SelfUpdatingTableModel) proteinTable.getModel();
                    int proteinIndex = tableModel.getViewIndex(proteinTable.getSelectedRow());
                    String proteinKey = proteinKeys.get(proteinIndex);
                    String peptideKey = peptideTableMap.get(getPeptideIndex(row));
                    new ProteinInferencePeptideLevelDialog(peptideShakerGUI, true, peptideKey, proteinKey);
                }
            }
        } catch (Exception e) {
            peptideShakerGUI.catchException(e);
        }
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            // open the protein inference at the petide level dialog
            if (column == peptideTable.getColumn("PI").getModelIndex() && evt != null && evt.getButton() == MouseEvent.BUTTON1) {
                try {
                    tableModel = (SelfUpdatingTableModel) proteinTable.getModel();
                    String proteinKey = proteinKeys.get(tableModel.getViewIndex(proteinTable.getSelectedRow()));
                    new ProteinInferencePeptideLevelDialog(peptideShakerGUI, true, peptideKey, proteinKey);
                } catch (Exception e) {
                    peptideShakerGUI.catchException(e);
                }
            }
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Related Classes of eu.isas.peptideshaker.gui.protein_inference.ProteinInferencePeptideLevelDialog

  • com.compomics.util.experiment.identification.matches.PeptideMatch
  • com.compomics.util.gui.error_handlers.HelpDialog
  • com.compomics.util.gui.renderers.AlignedListCellRenderer
  • eu.isas.peptideshaker.gui.tabpanels.OverviewPanel
  • eu.isas.peptideshaker.gui.tabpanels.ProteinStructurePanel
  • eu.isas.peptideshaker.gui.tabpanels.PtmPanel
  • eu.isas.peptideshaker.myparameters.PSParameter
  • no.uib.jsparklines.data.Chromosome
  • no.uib.jsparklines.extra.ChromosomeTableCellRenderer
  • no.uib.jsparklines.extra.HtmlLinksRenderer
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