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package data.cerevisiae.histmod.xue2012;
import fork.lib.base.file.FileName;
import fork.lib.base.file.management.Dirs;
import fork.lib.bio.anno.genomic.BarReader;
import fork.lib.bio.anno.genomic.BedGraphExporter;
import fork.lib.bio.anno.genomic.BedGraphReader;
import fork.lib.bio.anno.genomic.LandscapeBuilder;
import fork.lib.bio.anno.genomic.LandscapeTransformer;
import java.io.File;
/**
*
* @author man-mqbpjmg4
*/
public class Unlog {
public static void main(String[] args) throws Exception { //debug
File dir= Dirs.getFile("dir");
File d= new File(dir+"/other_datasets/xue_2012_h4k18_h3k16");
File[] fs= d.listFiles();
for( int i=0; i<fs.length; i++ ){
File f= fs[i];
if(FileName.getExt(f).equals("wig") && !f.getName().contains("unlog")){
LandscapeBuilder lb= new BedGraphReader(f).getLandscapeBuilder();
LandscapeTransformer lt= new LandscapeTransformer(lb);
lt.unlog();
File of= new File(d+"/unlog_"+FileName.getBaseName(f)+".wig");
new BedGraphExporter(lb).writeToFile(of);;
}
}
}
}