Package data.cerevisiae.inhouse.a_score

Examples of data.cerevisiae.inhouse.a_score.ScoreChipGene

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    File f= new File(d+"/"+tag+"_cai2011.wig"), od= new File(d+"/score/"+tag);
   
   
    LandscapeBuilder lb= new BedGraphReader(f).getLandscapeBuilder();
    ScoreChipGene sc= new ScoreChipGene(lb, org, od, tag+"_cai2011");
   
   
}
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    //File f= new File(d+"/GSM897361_H3K18_timeA_signal.bar"); String tag= "h3k18ac";
    File f= new File(d+"/GSM897366_H4K16_timeA_signal.bar"); String tag= "h4k16ac";
   
    File od= new File(d+"/score/"+tag);
    LandscapeBuilder lb= new BarReader(f).getLandscapeBuilder();
    ScoreChipGene sc= new ScoreChipGene(lb, org, od, tag+"_xue2012");
   
   
}
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    File f= new File(d+"/H9_H3K56ac.bar");
    LandscapeBuffer lb= new BarReader(f);
   
   
    File od= new File(d+"/"+FileName.getBaseName(f));
    ScoreChipGene sc= new ScoreChipGene(lb, org, od, FileName.getBaseName(f));
   
   
   
   
   
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    for(int i=0; i<fs.length ; i++){
        File f= fs[i];
        if(FileName.getExt(f).equals("wig") && f.getName().contains("for")){
            LandscapeBuilder lb= new BedGraphReader(f).getLandscapeBuilder();
            File odt= new File(od+"/"+FileName.getBaseName(f));
            ScoreChipGene sc= new ScoreChipGene(lb, org, odt, FileName.getBaseName(f));
        }
    }
   
   
   
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    String org= "sacCer1-xu";
    File f= new File(d+"/unlog_analyzed_data_complete_bw20.bar");
   
   
    LandscapeBuilder lb= new BarReader(f).getLandscapeBuilder();
    ScoreChipGene sc= new ScoreChipGene(lb, org, od, "lee2007");
   
   
   
   
   
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    File f= new File(d+"/"+tag+"_guillemette2011.wig"), od= new File(d+"/score/"+tag);
   
   
    LandscapeBuilder lb= new BedGraphReader(f).getLandscapeBuilder();
    ScoreChipGene sc= new ScoreChipGene(lb, org, od, tag+"_guillemette2011");
   
   
}
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    String org= "sacCer1-xu";
    File f= new File(d+"/unlog_analyzed_data_complete_bw20.bar");
   
   
    LandscapeBuilder lb= new BarReader(f).getLandscapeBuilder();
    ScoreChipGene sc= new ScoreChipGene(lb, org, od, "lee2007");
   
   
   
   
   
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    File f= new File(d+"/ratio-lee2007_norm_wig_chip_742-wt_r2_sacCer1.wig");
   
   
    LandscapeBuilder lb= new BedGraphReader(f).getLandscapeBuilder();
   
    ScoreChipGene sc= new ScoreChipGene(lb, org, od, "742-lee2007");
   
   
}
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Related Classes of data.cerevisiae.inhouse.a_score.ScoreChipGene

  • data.cerevisiae.at.Score
  • data.cerevisiae.histmod.cai2011.Score
  • data.cerevisiae.histmod.guillemette2011.Score
  • data.cerevisiae.histmod.kirmizis2009.Score
  • data.cerevisiae.histmod.xue2012.Score
  • data.cerevisiae.lee2007.Score
  • data.cerevisiae.lee2007.ScoreNorm
  • data.cerevisiae.nihroadmap.Score
  • fork.lib.bio.anno.genomic.BedGraphReader
  • fork.lib.bio.anno.genomic.BedReader
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