Package org.datacontract.schemas._2004._07.ManipulationParameter

Examples of org.datacontract.schemas._2004._07.ManipulationParameter.ManipulatingNode

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        // Read properties file.
        Properties propertiesLogin = new Properties();
        propertiesConfig = new Properties();
        try {
            propertiesLogin.load(new FileInputStream("src/simulationEngine/config/webserviceLogin.properties"));
            user = new User();
            user.setUsername(propertiesLogin.getProperty("username"));
            propertiesConfig.load(new FileInputStream("src/simulationEngine/config/SimulationEngineConfig.properties"));
            proxy.setEndpoint(propertiesConfig.getProperty("wsdlurl"));
//            proxy.setEndpoint(propertiesConfig.getProperty("stagingurl"));           
//            proxy.setEndpoint(propertiesConfig.getProperty("devurl"));                       
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        // Read properties file.
        Properties propertiesLogin = new Properties();
        propertiesConfig = new Properties();
        try {
            propertiesLogin.load(new FileInputStream("src/simulationEngine/config/webserviceLogin.properties"));
            user = new User();
            user.setUsername(propertiesLogin.getProperty("username"));
            propertiesConfig.load(new FileInputStream("src/simulationEngine/config/SimulationEngineConfig.properties"));
            proxy.setEndpoint(url);
            System.err.println("web service url for SimulationEngine:"+url);
//            proxy.setEndpoint(propertiesConfig.getProperty("stagingurl"));           
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        long milliseconds = System.currentTimeMillis();
       
        try {
            SimpleManipulationRequest smr = new SimpleManipulationRequest();
            smr.setSaveLastTimestepOnly(true);
            User user = new User();
            user.setUsername("beast");
            smr.setUser(user);
            smr.setBeginingTimestepIdx(startTimestep);
            smr.setTimestepsToRun(runTimestep);
            smr.setManipulationId(manipulationId);
            smr.setSaveLastTimestepOnly(false);
View Full Code Here
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            int nodeList[] = {1,8};
            int halfSDtoPlant = 200;
            String manpId = se.createAndRunSeregenttiSubFoodweb(nodeList, "testInsectWeb", 0, 1, true);
                   
           List<ManipulatingNode> nodes = new ArrayList<ManipulatingNode>();
            ManipulatingNode node = new ManipulatingNode();
            node.setTimestepIdx(1);
            node.setManipulationActionType(ManipulationActionType.SPECIES_PROLIFERATION.getManipulationActionType()); // proliferation
            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model
            node.setNodeIdx(1);
            node.setBeginingBiomass(2000);
            node.setHasLinks(false);
            nodes.add(node);


            node = new ManipulatingNode();
            node.setTimestepIdx(1);
            node.setManipulationActionType(ManipulationActionType.SPECIES_PROLIFERATION.getManipulationActionType()); // proliferation
            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model
            node.setNodeIdx(8);
            node.setBeginingBiomass(2);
            node.setHasLinks(false);
            nodes.add(node);

           
            List<ManipulatingParameter> sParams = new ArrayList<ManipulatingParameter>();
            se.setNodeParameter(1, ManipulatingParameterName.k.getManipulatingParameterIndex(), 8000, sParams);
            se.setLinkParameter(8, 1, ManipulatingParameterName.b0.getManipulatingParameterIndex(), halfSDtoPlant, 1, sParams);           

            se.updateSystemParameters(1, false, manpId, sParams, nodes);
          
            nodes = new ArrayList<ManipulatingNode>();
            node = new ManipulatingNode();
            node.setTimestepIdx(2);
            node.setManipulationActionType(ManipulationActionType.SPECIES_INVASION.getManipulationActionType()); // invasion
            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model
            node.setNodeIdx(2);
            node.setBeginingBiomass(2000);
            node.setHasLinks(false);
            node.setGameMode(true);           
            node.setOriginFoodwebId(se.getProperties().getProperty("serengetiNetworkId"));           
            nodes.add(node);            
           
            sParams = new ArrayList<ManipulatingParameter>();
            se.setNodeParameter(2, ManipulatingParameterName.k.getManipulatingParameterIndex(), 4000, 2, sParams);                                   
            se.setLinkParameter(8, 2, ManipulatingParameterName.b0.getManipulatingParameterIndex(), halfSDtoPlant, 2, sParams);                       
            se.updateSystemParameters(2, false, manpId, sParams, nodes);  

           
           
            nodes = new ArrayList<ManipulatingNode>();
            node = new ManipulatingNode();
            node.setTimestepIdx(3);
            node.setManipulationActionType(ManipulationActionType.SPECIES_INVASION.getManipulationActionType()); // invasion
            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model
            node.setNodeIdx(9);
            node.setBeginingBiomass(2);
            node.setHasLinks(false);
            node.setGameMode(true);           
            node.setOriginFoodwebId(se.getProperties().getProperty("serengetiNetworkId"));           
            nodes.add(node);            
           
            sParams = new ArrayList<ManipulatingParameter>();
            se.setLinkParameter(9, 1, ManipulatingParameterName.b0.getManipulatingParameterIndex(), halfSDtoPlant, 3, sParams);                       
            se.updateSystemParameters(3, false, manpId, sParams, nodes);              

           
           
           
            nodes = new ArrayList<ManipulatingNode>();
            node = new ManipulatingNode();
            node.setTimestepIdx(4);
            node.setManipulationActionType(ManipulationActionType.SPECIES_INVASION.getManipulationActionType()); // invasion
            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model
            node.setNodeIdx(12);
            node.setBeginingBiomass(1.5);
            node.setHasLinks(false);
            node.setGameMode(true);           
            node.setOriginFoodwebId(se.getProperties().getProperty("serengetiNetworkId"));           
            nodes.add(node);            
           
            sParams = new ArrayList<ManipulatingParameter>();
            se.setLinkParameter(12, 1, ManipulatingParameterName.b0.getManipulatingParameterIndex(), halfSDtoPlant, 4, sParams);           
            se.updateSystemParameters(4, false, manpId, sParams, nodes);              

           
           
            nodes = new ArrayList<ManipulatingNode>();
            node = new ManipulatingNode();
            node.setTimestepIdx(5);
            node.setManipulationActionType(ManipulationActionType.SPECIES_INVASION.getManipulationActionType()); // invasion
            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model
            node.setNodeIdx(5);
            node.setBeginingBiomass(2000);
            node.setHasLinks(false);
            node.setGameMode(true);           
            node.setOriginFoodwebId(se.getProperties().getProperty("serengetiNetworkId"));           
            nodes.add(node);            
           
            sParams = new ArrayList<ManipulatingParameter>();
            se.setNodeParameter(5, ManipulatingParameterName.k.getManipulatingParameterIndex(), 4000, 5, sParams);                                               
            se.setLinkParameter(12, 5, ManipulatingParameterName.b0.getManipulatingParameterIndex(), halfSDtoPlant, 5, sParams);                       
            se.updateSystemParameters(5, false, manpId, sParams, nodes);              

           
            nodes = new ArrayList<ManipulatingNode>();
            node = new ManipulatingNode();
            node.setTimestepIdx(6);
            node.setManipulationActionType(ManipulationActionType.SPECIES_INVASION.getManipulationActionType()); // invasion
            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model
            node.setNodeIdx(14);
            node.setBeginingBiomass(3);
            node.setHasLinks(false);
            node.setGameMode(true);           
            node.setOriginFoodwebId(se.getProperties().getProperty("serengetiNetworkId"));           
            nodes.add(node);            
           
            sParams = new ArrayList<ManipulatingParameter>();
            se.setLinkParameter(14, 1, ManipulatingParameterName.b0.getManipulatingParameterIndex(), halfSDtoPlant, 6, sParams);           
            se.setLinkParameter(14, 2, ManipulatingParameterName.b0.getManipulatingParameterIndex(), halfSDtoPlant, 6, sParams);           
            se.setLinkParameter(14, 5, ManipulatingParameterName.b0.getManipulatingParameterIndex(), halfSDtoPlant, 6, sParams);                       
            se.updateSystemParameters(6, false, manpId, sParams, nodes);              

           
           
            nodes = new ArrayList<ManipulatingNode>();
            node = new ManipulatingNode();
            node.setTimestepIdx(7);
            node.setManipulationActionType(ManipulationActionType.SPECIES_INVASION.getManipulationActionType()); // invasion
            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model
            node.setNodeIdx(7);
            node.setBeginingBiomass(2000);
            node.setHasLinks(false);
            node.setGameMode(true);           
            node.setOriginFoodwebId(se.getProperties().getProperty("serengetiNetworkId"));           
            nodes.add(node);            
           
            sParams = new ArrayList<ManipulatingParameter>();
            se.setNodeParameter(7, ManipulatingParameterName.k.getManipulatingParameterIndex(), 4000, 7, sParams);                                                           
            se.setLinkParameter(14, 7, ManipulatingParameterName.b0.getManipulatingParameterIndex(), halfSDtoPlant, 7, sParams);                       
            se.updateSystemParameters(7, false, manpId, sParams, nodes);              

           
            nodes = new ArrayList<ManipulatingNode>();
            node = new ManipulatingNode();
            node.setTimestepIdx(8);
            node.setManipulationActionType(ManipulationActionType.SPECIES_INVASION.getManipulationActionType()); // invasion
            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model
            node.setNodeIdx(16);
            node.setBeginingBiomass(1.3);
            node.setHasLinks(false);
            node.setGameMode(true);           
            node.setOriginFoodwebId(se.getProperties().getProperty("serengetiNetworkId"));           
            nodes.add(node);            
           
            sParams = new ArrayList<ManipulatingParameter>();
            se.setLinkParameter(16, 1, ManipulatingParameterName.b0.getManipulatingParameterIndex(), halfSDtoPlant, 8, sParams);                                   
            se.updateSystemParameters(8, false, manpId, sParams, nodes);              

           
            nodes = new ArrayList<ManipulatingNode>();
            node = new ManipulatingNode();
            node.setTimestepIdx(9);
            node.setManipulationActionType(ManipulationActionType.SPECIES_INVASION.getManipulationActionType()); // invasion
            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model
            node.setNodeIdx(20);
            node.setBeginingBiomass(1.2);
            node.setHasLinks(false);
            node.setGameMode(true);           
            node.setOriginFoodwebId(se.getProperties().getProperty("serengetiNetworkId"));           
            nodes.add(node);            
           
            sParams = new ArrayList<ManipulatingParameter>();
            se.updateSystemParameters(9, false, manpId, sParams, nodes);              
           
            se.run(10, 20, manpId, false);

           
            nodes = new ArrayList<ManipulatingNode>();
            node = new ManipulatingNode();
            node.setTimestepIdx(30);
            node.setManipulationActionType(ManipulationActionType.SPECIES_PROLIFERATION.getManipulationActionType()); // proliferation
            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model
            node.setNodeIdx(1);
            node.setBeginingBiomass(8000);
            node.setHasLinks(false);
            nodes.add(node);
           
            sParams = new ArrayList<ManipulatingParameter>();
            se.updateSystemParameters(30, false, manpId, sParams, nodes);              
           
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        {
            int nodeList[] = {4,5, 73};
            String manpId = se.createAndRunSeregenttiSubFoodweb(nodeList, "testNode4and73", 0, 1, true);
                   
           List<ManipulatingNode> nodes = new ArrayList<ManipulatingNode>();
            ManipulatingNode node = new ManipulatingNode();
            node.setTimestepIdx(1);
            node.setManipulationActionType(ManipulationActionType.SPECIES_PROLIFERATION.getManipulationActionType()); // proliferation
            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model
            node.setNodeIdx(4);
            node.setBeginingBiomass(10000);
            node.setHasLinks(false);
            nodes.add(node);

            node = new ManipulatingNode();
            node.setTimestepIdx(1);
            node.setManipulationActionType(ManipulationActionType.SPECIES_PROLIFERATION.getManipulationActionType()); // proliferation
            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model
            node.setNodeIdx(5);
            node.setBeginingBiomass(10000);
            node.setHasLinks(false);
            nodes.add(node);

           
            node = new ManipulatingNode();
            node.setTimestepIdx(1);
            node.setManipulationActionType(ManipulationActionType.SPECIES_PROLIFERATION.getManipulationActionType()); // proliferation
            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model
            node.setNodeIdx(73);
            node.setBeginingBiomass(10);
            node.setHasLinks(false);
            nodes.add(node);
           
           
            List<ManipulatingParameter> sParams = new ArrayList<ManipulatingParameter>();
//            this.setNodeParameter(5, ManipulatingParameterName.k.getManipulatingParameterIndex(), 8000, sParams);
View Full Code Here
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      {
            int nodeList[] = {1,8};
            String manpId = se.createAndRunSeregenttiSubFoodweb(nodeList, "testInsectWeb", 0, 1, true);
                   
           List<ManipulatingNode> nodes = new ArrayList<ManipulatingNode>();
            ManipulatingNode node = new ManipulatingNode();
            node.setTimestepIdx(1);
            node.setManipulationActionType(ManipulationActionType.SPECIES_PROLIFERATION.getManipulationActionType()); // proliferation
            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model
            node.setNodeIdx(1);
            node.setBeginingBiomass(2000);
            node.setHasLinks(false);
            nodes.add(node);


            node = new ManipulatingNode();
            node.setTimestepIdx(1);
            node.setManipulationActionType(ManipulationActionType.SPECIES_PROLIFERATION.getManipulationActionType()); // proliferation
            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model
            node.setNodeIdx(8);
            node.setBeginingBiomass(2);
            node.setHasLinks(false);
            nodes.add(node);

           
            List<ManipulatingParameter> sParams = new ArrayList<ManipulatingParameter>();
            se.setNodeParameter(1, ManipulatingParameterName.k.getManipulatingParameterIndex(), 8000, sParams);
            se.setNodeParameter(8, ManipulatingParameterName.x.getManipulatingParameterIndex(), 0.75, 1, sParams);           
//            this.setNodeParameter(12, ManipulatingParameterName.x.getManipulatingParameterIndex(), 0.9, sParams);                       
//            this.setNodeParameter(5, ManipulatingParameterName.k.getManipulatingParameterIndex(), 5000, sParams);           
//            this.setNodeParameter(4, ManipulatingParameterName.r.getManipulatingParameterIndex(), , sParams);
//            this.setNodeParameter(5, ManipulatingParameterName.r.getManipulatingParameterIndex(), 0.333, sParams);           

//            this.setLinkParameter(73, 4, ManipulatingParameterName.a.getManipulatingParameterIndex(), 0.6, 1, sParams);           
//            this.setLinkParameter(73, 5, ManipulatingParameterName.a.getManipulatingParameterIndex(), 0.4, 1, sParams);                       
            se.updateSystemParameters(1, false, manpId, sParams, nodes);

///            testParameters(manpId, sParams);
//            run(2, 8, manpId, false);                       

          
            nodes = new ArrayList<ManipulatingNode>();
            node = new ManipulatingNode();
            node.setTimestepIdx(2);
            node.setManipulationActionType(ManipulationActionType.SPECIES_INVASION.getManipulationActionType()); // invasion
            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model
            node.setNodeIdx(2);
            node.setBeginingBiomass(2000);
            node.setHasLinks(false);
            node.setGameMode(true);           
            node.setOriginFoodwebId(se.getProperties().getProperty("serengetiNetworkId"));           
            nodes.add(node);            
           
            sParams = new ArrayList<ManipulatingParameter>();
            se.setNodeParameter(2, ManipulatingParameterName.k.getManipulatingParameterIndex(), 4000, 2, sParams);                                   
//            se.setNodeParameter(12, ManipulatingParameterName.x.getManipulatingParameterIndex(), 0.85, 2, sParams);                       
//            this.setLinkParameter(9, 1, ManipulatingParameterName.a.getManipulatingParameterIndex(), 0.05, 1, sParams);           
//            this.setLinkParameter(9, 9, ManipulatingParameterName.a.getManipulatingParameterIndex(), 0.3, 1, sParams);                       
//            this.setLinkParameter(9, 12, ManipulatingParameterName.a.getManipulatingParameterIndex(), 0.65, 1, sParams);                       
           
//            this.setLinkParameter(73, 4, ManipulatingParameterName.d.getManipulatingParameterIndex(), 1, 3, sParams);
//            this.setNodeParameter(73, ManipulatingParameterName.x.getManipulatingParameterIndex(), 0.9, sParams);
//            this.setNodeParameter(5, ManipulatingParameterName.r.getManipulatingParameterIndex(), 0.333, sParams);           
            se.updateSystemParameters(2, false, manpId, sParams, nodes);  
//            run(3, 27, manpId, false);                         

           
           
            nodes = new ArrayList<ManipulatingNode>();
            node = new ManipulatingNode();
            node.setTimestepIdx(3);
            node.setManipulationActionType(ManipulationActionType.SPECIES_INVASION.getManipulationActionType()); // invasion
            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model
            node.setNodeIdx(9);
            node.setBeginingBiomass(2);
            node.setHasLinks(false);
            node.setGameMode(true);           
            node.setOriginFoodwebId(se.getProperties().getProperty("serengetiNetworkId"));           
            nodes.add(node);            
           
            sParams = new ArrayList<ManipulatingParameter>();
            se.updateSystemParameters(3, false, manpId, sParams, nodes);              

           
           
           
            nodes = new ArrayList<ManipulatingNode>();
            node = new ManipulatingNode();
            node.setTimestepIdx(4);
            node.setManipulationActionType(ManipulationActionType.SPECIES_INVASION.getManipulationActionType()); // invasion
            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model
            node.setNodeIdx(12);
            node.setBeginingBiomass(1.5);
            node.setHasLinks(false);
            node.setGameMode(true);           
            node.setOriginFoodwebId(se.getProperties().getProperty("serengetiNetworkId"));           
            nodes.add(node);            
           
            sParams = new ArrayList<ManipulatingParameter>();
            se.updateSystemParameters(4, false, manpId, sParams, nodes);              

           
           
            nodes = new ArrayList<ManipulatingNode>();
            node = new ManipulatingNode();
            node.setTimestepIdx(5);
            node.setManipulationActionType(ManipulationActionType.SPECIES_INVASION.getManipulationActionType()); // invasion
            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model
            node.setNodeIdx(5);
            node.setBeginingBiomass(2000);
            node.setHasLinks(false);
            node.setGameMode(true);           
            node.setOriginFoodwebId(se.getProperties().getProperty("serengetiNetworkId"));           
            nodes.add(node);            
           
            sParams = new ArrayList<ManipulatingParameter>();
            se.setNodeParameter(5, ManipulatingParameterName.k.getManipulatingParameterIndex(), 4000, 5, sParams);                                               
            se.updateSystemParameters(5, false, manpId, sParams, nodes);              

           
            nodes = new ArrayList<ManipulatingNode>();
            node = new ManipulatingNode();
            node.setTimestepIdx(6);
            node.setManipulationActionType(ManipulationActionType.SPECIES_INVASION.getManipulationActionType()); // invasion
            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model
            node.setNodeIdx(14);
            node.setBeginingBiomass(3);
            node.setHasLinks(false);
            node.setGameMode(true);           
            node.setOriginFoodwebId(se.getProperties().getProperty("serengetiNetworkId"));           
            nodes.add(node);            
           
            sParams = new ArrayList<ManipulatingParameter>();
            se.updateSystemParameters(6, false, manpId, sParams, nodes);              

           
           
            nodes = new ArrayList<ManipulatingNode>();
            node = new ManipulatingNode();
            node.setTimestepIdx(7);
            node.setManipulationActionType(ManipulationActionType.SPECIES_INVASION.getManipulationActionType()); // invasion
            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model
            node.setNodeIdx(7);
            node.setBeginingBiomass(2000);
            node.setHasLinks(false);
            node.setGameMode(true);           
            node.setOriginFoodwebId(se.getProperties().getProperty("serengetiNetworkId"));           
            nodes.add(node);            
           
            sParams = new ArrayList<ManipulatingParameter>();
            se.setNodeParameter(7, ManipulatingParameterName.k.getManipulatingParameterIndex(), 4000, 7, sParams);                                                           
            se.updateSystemParameters(7, false, manpId, sParams, nodes);              

           
            nodes = new ArrayList<ManipulatingNode>();
            node = new ManipulatingNode();
            node.setTimestepIdx(8);
            node.setManipulationActionType(ManipulationActionType.SPECIES_INVASION.getManipulationActionType()); // invasion
            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model
            node.setNodeIdx(16);
            node.setBeginingBiomass(1.3);
            node.setHasLinks(false);
            node.setGameMode(true);           
            node.setOriginFoodwebId(se.getProperties().getProperty("serengetiNetworkId"));           
            nodes.add(node);            
           
            sParams = new ArrayList<ManipulatingParameter>();
            se.updateSystemParameters(8, false, manpId, sParams, nodes);              

           
            nodes = new ArrayList<ManipulatingNode>();
            node = new ManipulatingNode();
            node.setTimestepIdx(9);
            node.setManipulationActionType(ManipulationActionType.SPECIES_INVASION.getManipulationActionType()); // invasion
            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model
            node.setNodeIdx(20);
            node.setBeginingBiomass(1.2);
            node.setHasLinks(false);
            node.setGameMode(true);           
            node.setOriginFoodwebId(se.getProperties().getProperty("serengetiNetworkId"));           
            nodes.add(node);            
           
            sParams = new ArrayList<ManipulatingParameter>();
            se.updateSystemParameters(9, false, manpId, sParams, nodes);              
           
            se.run(10, 20, manpId, false);

           
            nodes = new ArrayList<ManipulatingNode>();
            node = new ManipulatingNode();
            node.setTimestepIdx(30);
            node.setManipulationActionType(ManipulationActionType.SPECIES_PROLIFERATION.getManipulationActionType()); // proliferation
            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model
            node.setNodeIdx(1);
            node.setBeginingBiomass(8000);
            node.setHasLinks(false);
            nodes.add(node);
           
            sParams = new ArrayList<ManipulatingParameter>();
            se.updateSystemParameters(30, false, manpId, sParams, nodes);              
           
View Full Code Here
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      {
            int nodeList[] = {1,8};
            String manpId = se.createAndRunSeregenttiSubFoodweb(nodeList, "testInsectWeb", 0, 1, true);
                   
           List<ManipulatingNode> nodes = new ArrayList<ManipulatingNode>();
            ManipulatingNode node = new ManipulatingNode();
            node.setTimestepIdx(1);
            node.setManipulationActionType(ManipulationActionType.SPECIES_PROLIFERATION.getManipulationActionType()); // proliferation
            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model
            node.setNodeIdx(1);
            node.setBeginingBiomass(1);
            node.setHasLinks(false);
            nodes.add(node);


            node = new ManipulatingNode();
            node.setTimestepIdx(1);
            node.setManipulationActionType(ManipulationActionType.SPECIES_PROLIFERATION.getManipulationActionType()); // proliferation
            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model
            node.setNodeIdx(8);
            node.setBeginingBiomass(0.001);
            node.setHasLinks(false);
            nodes.add(node);

           
            List<ManipulatingParameter> sParams = new ArrayList<ManipulatingParameter>();
            se.setNodeParameter(1, ManipulatingParameterName.k.getManipulatingParameterIndex(), 2, sParams);
            se.setNodeParameter(8, ManipulatingParameterName.x.getManipulatingParameterIndex(), 0.75, 1, sParams);           
//            this.setNodeParameter(12, ManipulatingParameterName.x.getManipulatingParameterIndex(), 0.9, sParams);                       
//            this.setNodeParameter(5, ManipulatingParameterName.k.getManipulatingParameterIndex(), 5000, sParams);           
//            this.setNodeParameter(4, ManipulatingParameterName.r.getManipulatingParameterIndex(), , sParams);
//            this.setNodeParameter(5, ManipulatingParameterName.r.getManipulatingParameterIndex(), 0.333, sParams);           

//            this.setLinkParameter(73, 4, ManipulatingParameterName.a.getManipulatingParameterIndex(), 0.6, 1, sParams);           
//            this.setLinkParameter(73, 5, ManipulatingParameterName.a.getManipulatingParameterIndex(), 0.4, 1, sParams);                       
            se.updateSystemParameters(1, false, manpId, sParams, nodes);

///            testParameters(manpId, sParams);
//            run(2, 8, manpId, false);                       

          
            nodes = new ArrayList<ManipulatingNode>();
            node = new ManipulatingNode();
            node.setTimestepIdx(2);
            node.setManipulationActionType(ManipulationActionType.SPECIES_INVASION.getManipulationActionType()); // invasion
            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model
            node.setNodeIdx(2);
            node.setBeginingBiomass(1);
            node.setHasLinks(false);
            node.setGameMode(true);           
            node.setOriginFoodwebId(se.getProperties().getProperty("serengetiNetworkId"));           
            nodes.add(node);            
           
            sParams = new ArrayList<ManipulatingParameter>();
            se.setNodeParameter(2, ManipulatingParameterName.k.getManipulatingParameterIndex(), 2, 2, sParams);                                   
//            se.setNodeParameter(12, ManipulatingParameterName.x.getManipulatingParameterIndex(), 0.85, 2, sParams);                       
//            this.setLinkParameter(9, 1, ManipulatingParameterName.a.getManipulatingParameterIndex(), 0.05, 1, sParams);           
//            this.setLinkParameter(9, 9, ManipulatingParameterName.a.getManipulatingParameterIndex(), 0.3, 1, sParams);                       
//            this.setLinkParameter(9, 12, ManipulatingParameterName.a.getManipulatingParameterIndex(), 0.65, 1, sParams);                       
           
//            this.setLinkParameter(73, 4, ManipulatingParameterName.d.getManipulatingParameterIndex(), 1, 3, sParams);
//            this.setNodeParameter(73, ManipulatingParameterName.x.getManipulatingParameterIndex(), 0.9, sParams);
//            this.setNodeParameter(5, ManipulatingParameterName.r.getManipulatingParameterIndex(), 0.333, sParams);           
            se.updateSystemParameters(2, false, manpId, sParams, nodes);  
//            run(3, 27, manpId, false);                         

           
           
            nodes = new ArrayList<ManipulatingNode>();
            node = new ManipulatingNode();
            node.setTimestepIdx(3);
            node.setManipulationActionType(ManipulationActionType.SPECIES_INVASION.getManipulationActionType()); // invasion
            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model
            node.setNodeIdx(9);
            node.setBeginingBiomass(0.001);
            node.setHasLinks(false);
            node.setGameMode(true);           
            node.setOriginFoodwebId(se.getProperties().getProperty("serengetiNetworkId"));           
            nodes.add(node);            
           
            sParams = new ArrayList<ManipulatingParameter>();
            se.updateSystemParameters(3, false, manpId, sParams, nodes);              

           
           
           
            nodes = new ArrayList<ManipulatingNode>();
            node = new ManipulatingNode();
            node.setTimestepIdx(4);
            node.setManipulationActionType(ManipulationActionType.SPECIES_INVASION.getManipulationActionType()); // invasion
            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model
            node.setNodeIdx(12);
            node.setBeginingBiomass(0.00075);
            node.setHasLinks(false);
            node.setGameMode(true);           
            node.setOriginFoodwebId(se.getProperties().getProperty("serengetiNetworkId"));           
            nodes.add(node);            
           
            sParams = new ArrayList<ManipulatingParameter>();
            se.updateSystemParameters(4, false, manpId, sParams, nodes);              

           
           
            nodes = new ArrayList<ManipulatingNode>();
            node = new ManipulatingNode();
            node.setTimestepIdx(5);
            node.setManipulationActionType(ManipulationActionType.SPECIES_INVASION.getManipulationActionType()); // invasion
            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model
            node.setNodeIdx(5);
            node.setBeginingBiomass(1);
            node.setHasLinks(false);
            node.setGameMode(true);           
            node.setOriginFoodwebId(se.getProperties().getProperty("serengetiNetworkId"));           
            nodes.add(node);            
           
            sParams = new ArrayList<ManipulatingParameter>();
            se.setNodeParameter(5, ManipulatingParameterName.k.getManipulatingParameterIndex(), 2, 5, sParams);                                               
            se.updateSystemParameters(5, false, manpId, sParams, nodes);              

           
            nodes = new ArrayList<ManipulatingNode>();
            node = new ManipulatingNode();
            node.setTimestepIdx(6);
            node.setManipulationActionType(ManipulationActionType.SPECIES_INVASION.getManipulationActionType()); // invasion
            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model
            node.setNodeIdx(14);
            node.setBeginingBiomass(0.0015);
            node.setHasLinks(false);
            node.setGameMode(true);           
            node.setOriginFoodwebId(se.getProperties().getProperty("serengetiNetworkId"));           
            nodes.add(node);            
           
            sParams = new ArrayList<ManipulatingParameter>();
            se.updateSystemParameters(6, false, manpId, sParams, nodes);              

           
           
            nodes = new ArrayList<ManipulatingNode>();
            node = new ManipulatingNode();
            node.setTimestepIdx(7);
            node.setManipulationActionType(ManipulationActionType.SPECIES_INVASION.getManipulationActionType()); // invasion
            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model
            node.setNodeIdx(7);
            node.setBeginingBiomass(1);
            node.setHasLinks(false);
            node.setGameMode(true);           
            node.setOriginFoodwebId(se.getProperties().getProperty("serengetiNetworkId"));           
            nodes.add(node);            
           
            sParams = new ArrayList<ManipulatingParameter>();
            se.setNodeParameter(7, ManipulatingParameterName.k.getManipulatingParameterIndex(), 2, 7, sParams);                                                           
            se.updateSystemParameters(7, false, manpId, sParams, nodes);              

           
            nodes = new ArrayList<ManipulatingNode>();
            node = new ManipulatingNode();
            node.setTimestepIdx(8);
            node.setManipulationActionType(ManipulationActionType.SPECIES_INVASION.getManipulationActionType()); // invasion
            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model
            node.setNodeIdx(16);
            node.setBeginingBiomass(0.00065);
            node.setHasLinks(false);
            node.setGameMode(true);           
            node.setOriginFoodwebId(se.getProperties().getProperty("serengetiNetworkId"));           
            nodes.add(node);            
           
            sParams = new ArrayList<ManipulatingParameter>();
            se.updateSystemParameters(8, false, manpId, sParams, nodes);              

           
            nodes = new ArrayList<ManipulatingNode>();
            node = new ManipulatingNode();
            node.setTimestepIdx(9);
            node.setManipulationActionType(ManipulationActionType.SPECIES_INVASION.getManipulationActionType()); // invasion
            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model
            node.setNodeIdx(20);
            node.setBeginingBiomass(0.0006);
            node.setHasLinks(false);
            node.setGameMode(true);           
            node.setOriginFoodwebId(se.getProperties().getProperty("serengetiNetworkId"));           
            nodes.add(node);            
           
            sParams = new ArrayList<ManipulatingParameter>();
            se.updateSystemParameters(9, false, manpId, sParams, nodes);              
           
View Full Code Here
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            int nodeList[] = {1,8};
            int halfSDtoPlant = 200;
            String manpId = se.createAndRunSeregenttiSubFoodweb(nodeList, "testInsectWeb", 0, 1, true);
                   
           List<ManipulatingNode> nodes = new ArrayList<ManipulatingNode>();
            ManipulatingNode node = new ManipulatingNode();
            node.setTimestepIdx(1);
            node.setManipulationActionType(ManipulationActionType.SPECIES_PROLIFERATION.getManipulationActionType()); // proliferation
            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model
            node.setNodeIdx(8);
            node.setBeginingBiomass(0.02);
            node.setHasLinks(false);
            nodes.add(node);
            List<ManipulatingParameter> sParams = new ArrayList<ManipulatingParameter>();
            se.updateSystemParameters(1, false, manpId, sParams, nodes);

           
            nodes = new ArrayList<ManipulatingNode>();
            node = new ManipulatingNode();
            node.setTimestepIdx(2);
            node.setManipulationActionType(ManipulationActionType.SPECIES_INVASION.getManipulationActionType()); // invasion
            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model
            node.setNodeIdx(9);
            node.setBeginingBiomass(0.03);
            node.setHasLinks(false);
            node.setGameMode(true);           
            node.setOriginFoodwebId(se.getProperties().getProperty("serengetiNetworkId"));           
            nodes.add(node);            
            sParams = new ArrayList<ManipulatingParameter>();
            se.updateSystemParameters(2, false, manpId, sParams, nodes);  

           
            nodes = new ArrayList<ManipulatingNode>();
            node = new ManipulatingNode();
            node.setTimestepIdx(3);
            node.setManipulationActionType(ManipulationActionType.SPECIES_INVASION.getManipulationActionType()); // invasion
            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model
            node.setNodeIdx(11);
            node.setBeginingBiomass(0.02);
            node.setHasLinks(false);
            node.setGameMode(true);           
            node.setOriginFoodwebId(se.getProperties().getProperty("serengetiNetworkId"));           
            nodes.add(node);            
            sParams = new ArrayList<ManipulatingParameter>();
            se.updateSystemParameters(3, false, manpId, sParams, nodes);              

           
            nodes = new ArrayList<ManipulatingNode>();
            node = new ManipulatingNode();
            node.setTimestepIdx(4);
            node.setManipulationActionType(ManipulationActionType.SPECIES_INVASION.getManipulationActionType()); // invasion
            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model
            node.setNodeIdx(12);
            node.setBeginingBiomass(0.02);
            node.setHasLinks(false);
            node.setGameMode(true);           
            node.setOriginFoodwebId(se.getProperties().getProperty("serengetiNetworkId"));           
            nodes.add(node);            
            sParams = new ArrayList<ManipulatingParameter>();
            se.updateSystemParameters(4, false, manpId, sParams, nodes);              

           
            nodes = new ArrayList<ManipulatingNode>();
            node = new ManipulatingNode();
            node.setTimestepIdx(5);
            node.setManipulationActionType(ManipulationActionType.SPECIES_INVASION.getManipulationActionType()); // invasion
            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model
            node.setNodeIdx(3);
            node.setBeginingBiomass(1);
            node.setHasLinks(false);
            node.setGameMode(true);           
            node.setOriginFoodwebId(se.getProperties().getProperty("serengetiNetworkId"));           
            nodes.add(node);            
            sParams = new ArrayList<ManipulatingParameter>();
            se.updateSystemParameters(5, false, manpId, sParams, nodes);              

           
            nodes = new ArrayList<ManipulatingNode>();
            node = new ManipulatingNode();
            node.setTimestepIdx(6);
            node.setManipulationActionType(ManipulationActionType.SPECIES_INVASION.getManipulationActionType()); // invasion
            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model
            node.setNodeIdx(13);
            node.setBeginingBiomass(0.02);
            node.setHasLinks(false);
            node.setGameMode(true);           
            node.setOriginFoodwebId(se.getProperties().getProperty("serengetiNetworkId"));           
            nodes.add(node);            
            sParams = new ArrayList<ManipulatingParameter>();
            se.updateSystemParameters(6, false, manpId, sParams, nodes);              

           
            nodes = new ArrayList<ManipulatingNode>();
            node = new ManipulatingNode();
            node.setTimestepIdx(7);
            node.setManipulationActionType(ManipulationActionType.SPECIES_INVASION.getManipulationActionType()); // invasion
            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model
            node.setNodeIdx(14);
            node.setBeginingBiomass(0.02);
            node.setHasLinks(false);
            node.setGameMode(true);           
            node.setOriginFoodwebId(se.getProperties().getProperty("serengetiNetworkId"));           
            nodes.add(node);            
            sParams = new ArrayList<ManipulatingParameter>();
            se.updateSystemParameters(7, false, manpId, sParams, nodes);              

           
            nodes = new ArrayList<ManipulatingNode>();
            node = new ManipulatingNode();
            node.setTimestepIdx(8);
            node.setManipulationActionType(ManipulationActionType.SPECIES_INVASION.getManipulationActionType()); // invasion
            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model
            node.setNodeIdx(5);
            node.setBeginingBiomass(0.02);
            node.setHasLinks(false);
            node.setGameMode(true);           
            node.setOriginFoodwebId(se.getProperties().getProperty("serengetiNetworkId"));           
            nodes.add(node);            
            sParams = new ArrayList<ManipulatingParameter>();
            se.updateSystemParameters(8, false, manpId, sParams, nodes);              

           
            nodes = new ArrayList<ManipulatingNode>();
            node = new ManipulatingNode();
            node.setTimestepIdx(9);
            node.setManipulationActionType(ManipulationActionType.SPECIES_INVASION.getManipulationActionType()); // invasion
            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model
            node.setNodeIdx(7);
            node.setBeginingBiomass(1);
            node.setHasLinks(false);
            node.setGameMode(true);           
            node.setOriginFoodwebId(se.getProperties().getProperty("serengetiNetworkId"));           
            nodes.add(node);            
            sParams = new ArrayList<ManipulatingParameter>();
            se.updateSystemParameters(9, false, manpId, sParams, nodes);              

           
View Full Code Here
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           int nodeList[] = {4,73,80};
            int halfSDtoPlant = 200;
            String manpId = se.createAndRunSeregenttiSubFoodweb(nodeList, "testMay24_1", 0, 1, true);
                   
           List<ManipulatingNode> nodes = new ArrayList<ManipulatingNode>();
            ManipulatingNode node = new ManipulatingNode();
            node.setTimestepIdx(1);
            node.setManipulationActionType(ManipulationActionType.SPECIES_PROLIFERATION.getManipulationActionType()); // proliferation
            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model
            node.setNodeIdx(4);
            node.setBeginingBiomass(1);
            node.setHasLinks(false);
            nodes.add(node);
            node = new ManipulatingNode();
            node.setTimestepIdx(1);
            node.setManipulationActionType(ManipulationActionType.SPECIES_PROLIFERATION.getManipulationActionType()); // proliferation
            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model
            node.setNodeIdx(73);
            node.setBeginingBiomass(0.5);
            node.setHasLinks(false);
            nodes.add(node);
            node = new ManipulatingNode();
            node.setTimestepIdx(1);
            node.setManipulationActionType(ManipulationActionType.SPECIES_PROLIFERATION.getManipulationActionType()); // proliferation
            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model
            node.setNodeIdx(80);
            node.setBeginingBiomass(0.01);
            node.setHasLinks(false);
            nodes.add(node);           
           
            List<ManipulatingParameter> sParams = new ArrayList<ManipulatingParameter>();
           
//            se.setNodeParameter(4, ManipulatingParameterName.x.getManipulatingParameterIndex(), 4000, 1, sParams);          
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            String manpId = se.createAndRunSeregenttiSubFoodweb(nodeList, "sg10Test27",0, 1, true);
            System.out.println("manpId:"+manpId);
           
            List<ManipulatingNode> nodes = new ArrayList<ManipulatingNode>();
            ManipulatingNode node = new ManipulatingNode();
            node.setTimestepIdx(1);
            node.setManipulationActionType(ManipulationActionType.SPECIES_PROLIFERATION.getManipulationActionType()); // proliferation
            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model
            node.setNodeIdx(4);
            node.setBeginingBiomass(2500);
            node.setHasLinks(false);
            nodes.add(node);


            node = new ManipulatingNode();
            node.setTimestepIdx(1);
            node.setManipulationActionType(ManipulationActionType.SPECIES_PROLIFERATION.getManipulationActionType()); // proliferation
            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model
            node.setNodeIdx(5);
            node.setBeginingBiomass(2500);
            node.setHasLinks(false);
            nodes.add(node);
           
            node = new ManipulatingNode();
            node.setTimestepIdx(1);
            node.setManipulationActionType(ManipulationActionType.SPECIES_PROLIFERATION.getManipulationActionType()); // proliferation
            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model
            node.setNodeIdx(73);
            node.setBeginingBiomass(100);
            node.setHasLinks(false);
            nodes.add(node);           
           
            node = new ManipulatingNode();
            node.setTimestepIdx(1);
            node.setManipulationActionType(ManipulationActionType.SPECIES_INVASION.getManipulationActionType()); // invasion
            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model
            node.setNodeIdx(80);
            node.setBeginingBiomass(5);
            node.setHasLinks(false);
            node.setGameMode(true);           
            node.setOriginFoodwebId("74B9B375-1729-4516-A231-AE8A6114AACF");           
            nodes.add(node);                  
           
           
            List<ManipulatingParameter> sParams = new ArrayList<ManipulatingParameter>();
            se.setLinkParameter(73, 4, ManipulatingParameterName.d.getManipulatingParameterIndex(), 0.5, sParams);
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