/**
* Copyright (C) 2012-2013 Selventa, Inc.
*
* This file is part of the OpenBEL Framework.
*
* This program is free software; you can redistribute it and/or modify it
* under the terms of the GNU Lesser General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* The OpenBEL Framework is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY
* or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public
* License for more details.
*
* You should have received a copy of the GNU Lesser General Public License
* along with the OpenBEL Framework. If not, see <http://www.gnu.org/licenses/>.
*
* Additional Terms under LGPL v3:
*
* This license does not authorize you and you are prohibited from using the
* name, trademarks, service marks, logos or similar indicia of Selventa, Inc.,
* or, in the discretion of other licensors or authors of the program, the
* name, trademarks, service marks, logos or similar indicia of such authors or
* licensors, in any marketing or advertising materials relating to your
* distribution of the program or any covered product. This restriction does
* not waive or limit your obligation to keep intact all copyright notices set
* forth in the program as delivered to you.
*
* If you distribute the program in whole or in part, or any modified version
* of the program, and you assume contractual liability to the recipient with
* respect to the program or modified version, then you will indemnify the
* authors and licensors of the program for any liabilities that these
* contractual assumptions directly impose on those licensors and authors.
*/
package org.openbel.framework.core.annotation;
import static java.lang.String.format;
import static org.openbel.framework.common.Strings.INVALID_ANNOTATIONS;
import static org.openbel.framework.common.util.ValidationUtilities.*;
import java.util.ArrayList;
import java.util.List;
import java.util.regex.PatternSyntaxException;
import org.openbel.framework.common.model.Annotation;
import org.openbel.framework.common.model.AnnotationDefinition;
import org.openbel.framework.common.model.Document;
import org.openbel.framework.common.model.Statement;
import org.openbel.framework.core.compiler.SymbolWarning;
/**
* Default implementation of {@link AnnotationService}
*
* @author Steve Ungerer
*/
public class DefaultAnnotationService implements AnnotationService {
/**
* {@inheritDoc}
*/
@Override
public void verify(Annotation annotation) throws AnnotationSyntaxWarning {
try {
if (isValid(annotation)) return;
} catch (PatternSyntaxException e) {
// ignore it
}
// Pattern syntax is bad or annotation is not valid
// The annotation is defined by its annotation definition.
AnnotationDefinition annodef = annotation.getDefinition();
String annodefID = annodef.getId();
String url = annodef.getURL();
String annoval = annotation.getValue();
if (url == null) {
throw new AnnotationSyntaxWarning(annodefID, annoval);
}
throw new AnnotationSyntaxWarning(url, annodefID, annoval);
}
/**
* {@inheritDoc}
*/
@Override
public void verify(Statement statement) throws SymbolWarning {
if (statement.getAnnotationGroup() == null) {
return;
}
List<AnnotationSyntaxWarning> l =
new ArrayList<AnnotationSyntaxWarning>();
for (Annotation annotation : statement.getAnnotationGroup()
.getAnnotations()) {
try {
verify(annotation);
} catch (AnnotationSyntaxWarning asw) {
l.add(asw);
}
}
if (!l.isEmpty()) {
final String name = statement.toBELLongForm();
final String fmt = INVALID_ANNOTATIONS;
final String msg = format(fmt, l.size());
throw new SymbolWarning(name, msg, l);
}
}
/**
* {@inheritDoc}
*/
@Override
public void verify(Document document) throws SymbolWarning {
List<AnnotationSyntaxWarning> l =
new ArrayList<AnnotationSyntaxWarning>();
for (Annotation annotation : document.getAllAnnotations()) {
try {
verify(annotation);
} catch (AnnotationSyntaxWarning asw) {
l.add(asw);
}
}
if (!l.isEmpty()) {
final String name = document.getName();
final String fmt = INVALID_ANNOTATIONS;
final String msg = format(fmt, l.size());
throw new SymbolWarning(name, msg, l);
}
}
}