Package org.openbel.framework.core.annotation

Examples of org.openbel.framework.core.annotation.DefaultAnnotationService

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        final NamespaceService nsService = new DefaultNamespaceService(
                cache, cacheLookup, nsindexer);
        final SemanticService semantics = new SemanticServiceImpl(nsService);
        final ExpansionService expansion = new ExpansionServiceImpl();
        final AnnotationService annotationService =
                new DefaultAnnotationService();
        final AnnotationDefinitionService annotationDefinitionService =
                new DefaultAnnotationDefinitionService(cache, cacheLookup);

        p1 = new PhaseOneImpl(validator, converter,
                belValidator, belConverter, nsService, semantics,
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        final ProtoNetworkService protonetService =
                new ProtoNetworkServiceImpl();
        final SemanticService semantics = new SemanticServiceImpl(nsService);
        final ExpansionService expansion = new ExpansionServiceImpl();
        final AnnotationService annotationService =
                new DefaultAnnotationService();
        final AnnotationDefinitionService annotationDefinitionService =
                new DefaultAnnotationDefinitionService(cache, cacheLookup);

        p1 = new PhaseOneImpl(validator, converter,
                belValidator, belConverter, nsService, semantics,
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                new NamespaceIndexerServiceImpl();
        final NamespaceService nsService = new DefaultNamespaceService(
                cache, cacheLookup, nsindexer);
        final SemanticService semantics = new SemanticServiceImpl(nsService);
        final AnnotationService annotationService =
                new DefaultAnnotationService();
        validationService = new DefaultValidationService(
                nsService, semantics, annotationService);

        boolean pedantic = hasOption(PEDANTIC_OPTION);
        boolean permissive = hasOption(PERMISSIVE_OPTION);
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                    new BELValidatorServiceImpl(),
                    new BELConverterServiceImpl(),
                    nss,
                    new SemanticServiceImpl(nss), new ExpansionServiceImpl(),
                    new ProtoNetworkServiceImpl(),
                    new DefaultAnnotationService(),
                    new DefaultAnnotationDefinitionService(crs, cls));
        } catch (Exception e) {
            e.printStackTrace();
            fail("failed to create Phase One due to exception");
            return;
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        final ProtoNetworkService protonetService =
                new ProtoNetworkServiceImpl();
        final SemanticService semantics = new SemanticServiceImpl(nsService);
        final ExpansionService expansion = new ExpansionServiceImpl();
        final AnnotationService annotationService =
                new DefaultAnnotationService();
        final AnnotationDefinitionService annotationDefinitionService =
                new DefaultAnnotationDefinitionService(cache, cacheLookup);

        phaseOne = new PhaseOneImpl(validator, converter,
                belValidator, belConverter, nsService, semantics,
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Related Classes of org.openbel.framework.core.annotation.DefaultAnnotationService

  • org.openbel.framework.common.model.AnnotationDefinition
  • org.openbel.framework.core.compiler.PhaseOneIntegrationTest
  • org.openbel.framework.core.compiler.SymbolWarning
  • org.openbel.framework.test.EquivalenceIT
  • org.openbel.framework.tools.BelCheck
  • org.openbel.framework.tools.PhaseOneApplication
  • org.openbel.framework.tools.PhaseThreeApplication
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