/*
* Copyright (c) 2007-2012 The Broad Institute, Inc.
* SOFTWARE COPYRIGHT NOTICE
* This software and its documentation are the copyright of the Broad Institute, Inc. All rights are reserved.
*
* This software is supplied without any warranty or guaranteed support whatsoever. The Broad Institute is not responsible for its use, misuse, or functionality.
*
* This software is licensed under the terms of the GNU Lesser General Public License (LGPL),
* Version 2.1 which is available at http://www.opensource.org/licenses/lgpl-2.1.php.
*/
package org.broad.igv.ui.action;
import org.apache.log4j.Logger;
import org.broad.igv.PreferenceManager;
import org.broad.igv.batch.BatchRunner;
import org.broad.igv.ui.IGV;
import org.broad.igv.ui.util.FileDialogUtils;
import javax.swing.*;
import java.awt.*;
import java.awt.event.ActionEvent;
import java.io.File;
public class RunScriptMenuAction extends MenuAction {
static Logger log = Logger.getLogger(LoadFilesMenuAction.class);
IGV mainFrame;
public RunScriptMenuAction(String label, int mnemonic, IGV mainFrame) {
super(label, null, mnemonic);
this.mainFrame = mainFrame;
}
public void actionPerformed(ActionEvent e) {
if (e.getActionCommand().equalsIgnoreCase("run batch script...")) {
File script = chooseScriptFile();
if (script != null && script.isFile()) {
final BatchRunner bRun = new BatchRunner(script.getPath());
SwingWorker worker = new SwingWorker() {
@Override
protected Object doInBackground() throws Exception {
bRun.run();
return null;
}
};
worker.execute();
}
}
}
private File chooseScriptFile() {
File lastDirectoryFile = PreferenceManager.getInstance().getLastTrackDirectory();
File scriptFile = FileDialogUtils.chooseFile("Select Script", lastDirectoryFile, FileDialog.LOAD);
if (scriptFile != null) {
// Store the last accessed file location
PreferenceManager.getInstance().setLastTrackDirectory(scriptFile.getParentFile());
}
mainFrame.resetStatusMessage();
return scriptFile;
}
}