Examples of yAxisZoomExcludesBackgroundPeaks()

Examples of com.compomics.util.preferences.AnnotationPreferences.yAxisZoomExcludesBackgroundPeaks()

2731
2732
2733
2734
2735
2736
2737
2738
2739
2740
2741
                                                annotationPreferences.getFragmentIonAccuracy(), false, annotationPreferences.isHighResolutionAnnotation());

                                        // add the spectrum annotations
                                        tempSpectrumPanel.setAnnotations(SpectrumAnnotator.getSpectrumAnnotation(annotations));
                                        tempSpectrumPanel.showAnnotatedPeaksOnly(!annotationPreferences.showAllPeaks());
                                        tempSpectrumPanel.setYAxisZoomExcludesBackgroundPeaks(annotationPreferences.yAxisZoomExcludesBackgroundPeaks());

                                        // add de novo sequencing
                                        tempSpectrumPanel.addAutomaticDeNovoSequencing(peptide, annotations,
                                                forwardIon, rewindIon, annotationPreferences.getDeNovoCharge(),
                                                annotationPreferences.showForwardIonDeNovoTags(),
View Full Code Here

Examples of com.compomics.util.preferences.AnnotationPreferences.yAxisZoomExcludesBackgroundPeaks()

2770
2771
2772
2773
2774
2775
2776
2777
2778
2779
2780
                                                false, annotationPreferences.isHighResolutionAnnotation());

                                        // add the spectrum annotations
                                        tempSpectrumPanel.setAnnotations(SpectrumAnnotator.getSpectrumAnnotation(annotations));
                                        tempSpectrumPanel.showAnnotatedPeaksOnly(!annotationPreferences.showAllPeaks());
                                        tempSpectrumPanel.setYAxisZoomExcludesBackgroundPeaks(annotationPreferences.yAxisZoomExcludesBackgroundPeaks());

                                        // add de novo sequencing
                                        tempSpectrumPanel.addAutomaticDeNovoSequencing(tagAssumption.getTag(), annotations,
                                                forwardIon, rewindIon, annotationPreferences.getDeNovoCharge(),
                                                annotationPreferences.showForwardIonDeNovoTags(),
View Full Code Here

Examples of com.compomics.util.preferences.AnnotationPreferences.yAxisZoomExcludesBackgroundPeaks()

3892
3893
3894
3895
3896
3897
3898
3899
3900
3901
3902
                currentSpectrumKey = spectrumMatch.getKey();

                // add the spectrum annotations
                spectrum.setAnnotations(SpectrumAnnotator.getSpectrumAnnotation(annotations));
                spectrum.showAnnotatedPeaksOnly(!annotationPreferences.showAllPeaks());
                spectrum.setYAxisZoomExcludesBackgroundPeaks(annotationPreferences.yAxisZoomExcludesBackgroundPeaks());

                SearchParameters searchParameters = peptideShakerGUI.getSearchParameters();
                int forwardIon = searchParameters.getIonSearched1();
                int rewindIon = searchParameters.getIonSearched2();
View Full Code Here

Examples of com.compomics.util.preferences.AnnotationPreferences.yAxisZoomExcludesBackgroundPeaks()

4392
4393
4394
4395
4396
4397
4398
4399
4400
4401
4402
                            currentSpectrumKey = spectrumKey;

                            // show all or just the annotated peaks
                            spectrumPanel.showAnnotatedPeaksOnly(!annotationPreferences.showAllPeaks());
                            spectrumPanel.setYAxisZoomExcludesBackgroundPeaks(annotationPreferences.yAxisZoomExcludesBackgroundPeaks());

                            int forwardIon = peptideShakerGUI.getSearchParameters().getIonSearched1();
                            int rewindIon = peptideShakerGUI.getSearchParameters().getIonSearched2();

                            // add de novo sequencing
View Full Code Here
TOP
Copyright © 2018 www.massapi.com. All rights reserved.
All source code are property of their respective owners. Java is a trademark of Sun Microsystems, Inc and owned by ORACLE Inc. Contact coftware#gmail.com.