DNVGraph graph = generateGraph( input, n, output );
graph.writeGraph( Settings.GRAPHS_PATH + "MDS_stressMinimization.dnv" );
output = MDSJ.classicalScaling( input ); // apply MDS
graph = generateGraph( input, n, output );
graph.writeGraph( Settings.GRAPHS_PATH + "MDS_classicalMDS.dnv" );
float width = GraphFunctions.getGraphWidth( graph, 0, false );
new RandomLayout().runLayout( graph, 0, width );
new FruchtermanReingold().runLayout( width, width, graph, 0.01f, 0, false, false );