Examples of useFilter()

Examples of weka.filters.supervised.attribute.AttributeSelection.useFilter()

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        attribSel.setEvaluator(roc);
        attribSel.setSearch(rnkr);

        attribSel.setInputFormat(learn);
        Instances learnPostSel = attribSel.useFilter(learn, attribSel);
        Instances holdPostSel = attribSel.useFilter(hold, attribSel);

        wrep.BGS_univariate_ROC = new double[learn.numAttributes()-1];
        for (int univ_counter = 0 ; univ_counter<learnPostSel.numAttributes()-1; univ_counter++) {
            wrep.BGS_univariate_ROC[univ_counter] = roc.evaluateAttribute(univ_counter);
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Examples of weka.filters.supervised.attribute.AttributeSelection.useFilter()

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        attribSel.setEvaluator(roc);
        attribSel.setSearch(rnkr);

        attribSel.setInputFormat(learn);
        Instances learnPostSel = attribSel.useFilter(learn, attribSel);
        Instances holdPostSel = attribSel.useFilter(hold, attribSel);

        wrep.BGS_univariate_ROC = new double[learn.numAttributes()-1];
        for (int univ_counter = 0 ; univ_counter<learnPostSel.numAttributes()-1; univ_counter++) {
            wrep.BGS_univariate_ROC[univ_counter] = roc.evaluateAttribute(univ_counter);
        }
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Examples of weka.filters.supervised.attribute.AttributeSelection.useFilter()

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        attribSel.setEvaluator(pval);
        attribSel.setSearch(rnkr);


        attribSel.setInputFormat(learn);
        Instances learnPostSel = attribSel.useFilter(learn, attribSel);
        Instances holdPostSel = attribSel.useFilter(hold, attribSel);

        wrep.TTEST_univariate_p_value_raw = new double[learnPostSel.numAttributes() - 1];
        wrep.TTEST_univariate_p_value_log = new double[learnPostSel.numAttributes() - 1];
        wrep.TTEST_univariate_fold_change_log = new double[learnPostSel.numAttributes() - 1];
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Examples of weka.filters.supervised.attribute.AttributeSelection.useFilter()

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        attribSel.setSearch(rnkr);


        attribSel.setInputFormat(learn);
        Instances learnPostSel = attribSel.useFilter(learn, attribSel);
        Instances holdPostSel = attribSel.useFilter(hold, attribSel);

        wrep.TTEST_univariate_p_value_raw = new double[learnPostSel.numAttributes() - 1];
        wrep.TTEST_univariate_p_value_log = new double[learnPostSel.numAttributes() - 1];
        wrep.TTEST_univariate_fold_change_log = new double[learnPostSel.numAttributes() - 1];
        wrep.TTEST_univariate_fold_change_raw = new double[learnPostSel.numAttributes() - 1];
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Examples of weka.filters.unsupervised.attribute.Remove.useFilter()

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        for (int removeNaive_counter = learnPostSel.numAttributes() -2;removeNaive_counter > 1 ; removeNaive_counter--){
            StringBuilder sb = new StringBuilder("");
            sb.append(removeNaive_counter).append("-").append(learnPostSel.numAttributes()-1);
            rm.setAttributeIndices(sb.toString());
            rm.setInputFormat(learnPostSel);
            Instances learnPostSelNaive = rm.useFilter(learnPostSel, rm);

            // TODO: make a chart here.

//            bnCopy = Classifier.makeCopy(bn);
//            bnCopyEv = Classifier.makeCopy(bn);
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Examples of weka.filters.unsupervised.attribute.Remove.useFilter()

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            StringBuilder sb = new StringBuilder("");
            sb.append(winningNaiveRemove).append("-").append(learnPostSel.numAttributes()-1);

            rm.setAttributeIndices(sb.toString());
            rm.setInputFormat(learnPostSel);
            Instances learnPreRandRemove = rm.useFilter(learnPostSel, rm);
            Instances holdPreRandRemove = rm.useFilter(holdPostSel, rm);

            wrep.BGS_midAttributeSelectionNumberOfFeatures = learnPreRandRemove.numAttributes();
           
            ev = new Evaluation(learnPreRandRemove);
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Examples of weka.filters.unsupervised.attribute.Remove.useFilter()

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            sb.append(winningNaiveRemove).append("-").append(learnPostSel.numAttributes()-1);

            rm.setAttributeIndices(sb.toString());
            rm.setInputFormat(learnPostSel);
            Instances learnPreRandRemove = rm.useFilter(learnPostSel, rm);
            Instances holdPreRandRemove = rm.useFilter(holdPostSel, rm);

            wrep.BGS_midAttributeSelectionNumberOfFeatures = learnPreRandRemove.numAttributes();
           
            ev = new Evaluation(learnPreRandRemove);
            ev.crossValidateModel(Classifier.makeCopy(bn), learnPreRandRemove,Math.min(CVfoldNum,learn.numInstances()),new Random(winningNaiveRemove));
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Examples of weka.filters.unsupervised.attribute.Remove.useFilter()

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//                        remString.append(theInt).append(";");
                        rmv.setAttributeIndices(theInt);

                        try{
                            rmv.setInputFormat(learnPostRandRemove);
                            learnPostRandRemove = rmv.useFilter(learnPostRandRemove, rmv);
//                            holdPostRandRemove = rmv.useFilter(holdPostRandRemove, rmv);
                        } catch (Exception ex) {System.out.println(ex.toString());}
                    } // rmv_counter

                     // now the postRandRemove instances are configured
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Examples of weka.filters.unsupervised.attribute.Remove.useFilter()

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                        remString.append(theInt).append(";");
                        rmv.setAttributeIndices(theInt);

                        try{
                            rmv.setInputFormat(learnFinalRound);
                            learnFinalRound = rmv.useFilter(learnFinalRound, rmv);
                            holdFinalRound = rmv.useFilter(holdFinalRound, rmv);
                        } catch (Exception ex) {System.out.println(ex.toString());}
                    } // rmv_counter

                     // now the postRandRemove instances are configured
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Examples of weka.filters.unsupervised.attribute.Remove.useFilter()

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                        rmv.setAttributeIndices(theInt);

                        try{
                            rmv.setInputFormat(learnFinalRound);
                            learnFinalRound = rmv.useFilter(learnFinalRound, rmv);
                            holdFinalRound = rmv.useFilter(holdFinalRound, rmv);
                        } catch (Exception ex) {System.out.println(ex.toString());}
                    } // rmv_counter

                     // now the postRandRemove instances are configured
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