LearnerGraph pta=new LearnerGraph(config);
for(List<Label> seq:sPlus)
pta.paths.augmentPTA(seq,true,false,null);
for(List<Label> seq:sMinus)
pta.paths.augmentPTA(seq,false,false,null);
pta.clearColours();
new MarkovClassifier(m, pta).updateMarkov(false);// construct Markov chain
// For Markov, we do not need to learn anything at all - our Markov matrix contains enough information to classify paths and hence compare it to the reference graph.
ConfusionMatrix mat = DiffExperiments.classifyAgainstMarkov(testSet, referenceGraph, m);
DifferenceToReferenceLanguageBCR differenceBCRMarkov = new DifferenceToReferenceLanguageBCR(mat);