}
}
String tmpnewick, newick = atree.getNewickString();
List<TaxonLabel> txnlbllistclone = new ArrayList<TaxonLabel>(txnlbllist);
tlSet.sortByTaxonLabelLength(txnlbllistclone);
HashMap<String, Integer> txnOrder = new HashMap<String, Integer>();
for (int y = 0; y < numoftxnlbls; y++) {
txnOrder.put(txnlbllist.get(y).getTaxonLabel(), y);
}
for (int z = 0; z < numoftxnlbls; z++) {