Examples of simpleAssemble()

Examples of abra.NativeAssembler.simpleAssemble()

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    filterNbases(reads);
   
    if (reads.size() > 1) {
      NativeAssembler assem = newAssembler();
     
      String contigs = assem.simpleAssemble(reads);
     
      if (contigs.equals("<ERROR>") || contigs.equals("<REPEAT>")) {
       
        badRegionBed.write(getRegionEntry(reads) + "\n");
       
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