List of scpFrom() Examples

Examples of scpFrom()

org.apache.airavata.gsi.ssh.api.Cluster.scpFrom()
This will copy a remote file in path rFile to local file lFile @param remoteFile remote file path, this has to be a full qualified path @param localFile This is the local file to copy, this can be a directory too @throws SSHApiException
org.apache.airavata.gsi.ssh.util.SSHUtils.scpFrom()
This method will copy a remote file to a local directory @param remoteFile remote file path, this has to be a full qualified path @param localFile This is the local file to copy, this can be a directory too @param session @return returns the final local file path of the new file came from the remote resource

Examples of org.apache.airavata.gsi.ssh.api.Cluster.scpFrom()

            if (index < oldIndex) {
                localStdOutFile = new File(oldFiles.get(index));
                data.append(oldFiles.get(index++)).append(",");
            } else {
                localStdOutFile = new File(outputDataDir + File.separator + timeStampedServiceName + "stdout");
                cluster.scpFrom(app.getStandardOutput(), localStdOutFile.getAbsolutePath());
                Thread.sleep(1000);
                StringBuffer temp = new StringBuffer(data.append(localStdOutFile.getAbsolutePath()).append(",").toString());
                GFacUtils.savePluginData(jobExecutionContext, temp.insert(0, ++index), this.getClass().getName());
            }
            if (index < oldIndex) {

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Examples of org.apache.airavata.gsi.ssh.api.Cluster.scpFrom()

            if (index < oldIndex) {
                localStdErrFile = new File(oldFiles.get(index));
                data.append(oldFiles.get(index++)).append(",");
            } else {
                localStdErrFile = new File(outputDataDir + File.separator + timeStampedServiceName + "stderr");
                cluster.scpFrom(app.getStandardError(), localStdErrFile.getAbsolutePath());
                Thread.sleep(1000);
                StringBuffer temp = new StringBuffer(data.append(localStdErrFile.getAbsolutePath()).append(",").toString());
                GFacUtils.savePluginData(jobExecutionContext, temp.insert(0, ++index), this.getClass().getName());
            }

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Examples of org.apache.airavata.gsi.ssh.api.Cluster.scpFrom()

                                String localFile;
                                if (index < oldIndex) {
                                    localFile = oldFiles.get(index);
                                    data.append(oldFiles.get(index++)).append(",");
                                } else {
                                    cluster.scpFrom(downloadFile, outputDataDir);
                                    String fileName = downloadFile.substring(downloadFile.lastIndexOf(File.separatorChar) + 1, downloadFile.length());
                                    localFile = outputDataDir + File.separator + fileName;
                                    StringBuffer temp = new StringBuffer(data.append(localFile).append(",").toString());
                                    GFacUtils.savePluginData(jobExecutionContext, temp.insert(0, ++index), this.getClass().getName());
                                }

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Examples of org.apache.airavata.gsi.ssh.api.Cluster.scpFrom()

                        String outputFile;
                        if (index < oldIndex) {
                            outputFile = oldFiles.get(index);
                            data.append(oldFiles.get(index++)).append(",");
                        } else {
                            cluster.scpFrom(app.getOutputDataDirectory() + File.separator + valueList, outputDataDir);
                            outputFile = outputDataDir + File.separator + valueList;
                            jobExecutionContext.addOutputFile(outputFile);
                            StringBuffer temp = new StringBuffer(data.append(outputFile).append(",").toString());
                            GFacUtils.savePluginData(jobExecutionContext, temp.insert(0, ++index), this.getClass().getName());
                        }

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Examples of org.apache.airavata.gsi.ssh.api.Cluster.scpFrom()




            localStdOutFile = new File(outputDataDir + File.separator + timeStampedServiceName + "stdout");
            localStdErrFile = new File(outputDataDir + File.separator + timeStampedServiceName + "stderr");
//            cluster.makeDirectory(outputDataDir);
            cluster.scpFrom(app.getStandardOutput(), localStdOutFile.getAbsolutePath());
            Thread.sleep(1000);
            cluster.scpFrom(app.getStandardError(), localStdErrFile.getAbsolutePath());
            Thread.sleep(1000);


            String stdOutStr = GFacUtils.readFileToString(localStdOutFile.getAbsolutePath());

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Examples of org.apache.airavata.gsi.ssh.api.Cluster.scpFrom()

            localStdOutFile = new File(outputDataDir + File.separator + timeStampedServiceName + "stdout");
            localStdErrFile = new File(outputDataDir + File.separator + timeStampedServiceName + "stderr");
//            cluster.makeDirectory(outputDataDir);
            cluster.scpFrom(app.getStandardOutput(), localStdOutFile.getAbsolutePath());
            Thread.sleep(1000);
            cluster.scpFrom(app.getStandardError(), localStdErrFile.getAbsolutePath());
            Thread.sleep(1000);


            String stdOutStr = GFacUtils.readFileToString(localStdOutFile.getAbsolutePath());
            String stdErrStr = GFacUtils.readFileToString(localStdErrFile.getAbsolutePath());
            status.setTransferState(TransferState.COMPLETE);

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Examples of org.apache.airavata.gsi.ssh.api.Cluster.scpFrom()

                        outputArray.clear();
                        for (String key : strings) {
                            ActualParameter actualParameter1 = (ActualParameter) output.get(key);
                            if ("URI".equals(actualParameter1.getType().getType().toString())) {
                                String downloadFile = MappingFactory.toString(actualParameter1);
                              cluster.scpFrom(downloadFile, outputDataDir);
                              String fileName = downloadFile.substring(downloadFile.lastIndexOf(File.separatorChar)+1, downloadFile.length());
                              String localFile = outputDataDir +  File.separator +fileName;
                jobExecutionContext.addOutputFile(localFile);
                MappingFactory.fromString(actualParameter1, localFile);
                DataObjectType dataObjectType = new DataObjectType();

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Examples of org.apache.airavata.gsi.ssh.api.Cluster.scpFrom()

                        }
                    
                        break;
                    } else {
                        String valueList = outputList.get(0);
                        cluster.scpFrom(app.getOutputDataDirectory() + File.separator + valueList, outputDataDir);
                        jobExecutionContext.addOutputFile(outputDataDir + File.separator + valueList);
                        DataObjectType dataObjectType = new DataObjectType();
                        dataObjectType.setValue(valueList);
                        dataObjectType.setKey(paramName);
                        dataObjectType.setType(DataType.URI);

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Examples of org.apache.airavata.gsi.ssh.api.Cluster.scpFrom()




            localStdOutFile = new File(outputDataDir + File.separator + timeStampedServiceName + "stdout");
            localStdErrFile = new File(outputDataDir + File.separator + timeStampedServiceName + "stderr");
//            cluster.makeDirectory(outputDataDir);
            cluster.scpFrom(app.getStandardOutput(), localStdOutFile.getAbsolutePath());
            Thread.sleep(1000);
            cluster.scpFrom(app.getStandardError(), localStdErrFile.getAbsolutePath());
            Thread.sleep(1000);


            String stdOutStr = GFacUtils.readFileToString(localStdOutFile.getAbsolutePath());

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Examples of org.apache.airavata.gsi.ssh.api.Cluster.scpFrom()

            localStdOutFile = new File(outputDataDir + File.separator + timeStampedServiceName + "stdout");
            localStdErrFile = new File(outputDataDir + File.separator + timeStampedServiceName + "stderr");
//            cluster.makeDirectory(outputDataDir);
            cluster.scpFrom(app.getStandardOutput(), localStdOutFile.getAbsolutePath());
            Thread.sleep(1000);
            cluster.scpFrom(app.getStandardError(), localStdErrFile.getAbsolutePath());
            Thread.sleep(1000);


            String stdOutStr = GFacUtils.readFileToString(localStdOutFile.getAbsolutePath());
            String stdErrStr = GFacUtils.readFileToString(localStdErrFile.getAbsolutePath());
            status.setTransferState(TransferState.COMPLETE);

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