Examples of reloadAndGetList()

Examples of fork.lib.math.applied.buffer.Landscape2DBuffer.reloadAndGetList()

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                    grhigh= new GenomicRegion(gr.chr, high-side, high+side);

                   
                    double forl= score(tsf.reloadAndGetList(grlow), grlow);
                    double forh= score(tsf.reloadAndGetList(grhigh), grhigh);
                    double revl= score(tsr.reloadAndGetList(grlow), grlow);
                    double revh= score(tsr.reloadAndGetList(grhigh), grhigh);
                   
                    System.out.println(gr.toUCSCFormat()+"    "+ forl+"  "+ forh+"  "+ revl+"  "+revh);
                    System.out.println();
                }
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Examples of fork.lib.math.applied.buffer.Landscape2DBuffer.reloadAndGetList()

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                    double forl= score(tsf.reloadAndGetList(grlow), grlow);
                    double forh= score(tsf.reloadAndGetList(grhigh), grhigh);
                    double revl= score(tsr.reloadAndGetList(grlow), grlow);
                    double revh= score(tsr.reloadAndGetList(grhigh), grhigh);
                   
                    System.out.println(gr.toUCSCFormat()+"    "+ forl+"  "+ forh+"  "+ revl+"  "+revh);
                    System.out.println();
                }
            }
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Examples of fork.lib.math.applied.buffer.Landscape2DBuffer.reloadAndGetList()

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                grlow= new GenomicRegion(gr.chr, low-side, low+side);
                grhigh= new GenomicRegion(gr.chr, high-side, high+side);
               
                double forl= score(tsf.reloadAndGetList(grlow), grlow);
                double forh= score(tsf.reloadAndGetList(grhigh), grhigh);
                double revl= score(tsr.reloadAndGetList(grlow), grlow);
                double revh= score(tsr.reloadAndGetList(grhigh), grhigh);
                Res res= new Res(forl, forh, revl, revh);
                ress.put(gr,res);
                //System.out.println(low+"   "+ high);
                //System.out.println(gr.toUCSCFormat()+"  "+ res.str+"   "+ forl+"  "+ forh+"  "+ revl+"  "+revh);
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Examples of fork.lib.math.applied.buffer.Landscape2DBuffer.reloadAndGetList()

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                grhigh= new GenomicRegion(gr.chr, high-side, high+side);
               
                double forl= score(tsf.reloadAndGetList(grlow), grlow);
                double forh= score(tsf.reloadAndGetList(grhigh), grhigh);
                double revl= score(tsr.reloadAndGetList(grlow), grlow);
                double revh= score(tsr.reloadAndGetList(grhigh), grhigh);
                Res res= new Res(forl, forh, revl, revh);
                ress.put(gr,res);
                //System.out.println(low+"   "+ high);
                //System.out.println(gr.toUCSCFormat()+"  "+ res.str+"   "+ forl+"  "+ forh+"  "+ revl+"  "+revh);
            }
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Examples of fork.lib.math.applied.buffer.RegionBuffer.reloadAndGetList()

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        ArrayList<Region> frs= lbf.getLandscape2DForChromosome(chr).getRegions();
        ArrayList<Region> irs= lbi.getLandscape2DForChromosome(chr).getRegions();
        RegionBuffer buf= new RegionBuffer(irs);
        for( int j=0; j<frs.size(); j++ ){
            Region fr= frs.get(j);
            ArrayList<Region> bufrs= buf.reloadAndGetList(fr);
            double ival= RegionBuffer.getOverlap(bufrs, fr) / (fr.getRange()+1);
            double fval= (double)fr.attribute();
            double nv= fval - ival*rat;
           
            //System.out.println(fval+"    "+ ival+"   "+ fr.getRange());
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