Examples of reactions()

Examples of org.openscience.cdk.interfaces.IReactionSet.reactions()

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        // we give all reactions an ID, in case they have none
        // IDs are needed for handling in JCP
        IReactionSet reactionSet = chemModel.getReactionSet();
        if (reactionSet != null) {
            int i = 0;
            for (IReaction reaction : reactionSet.reactions()) {
                if (reaction.getID() == null)
                    reaction.setID("Reaction " + (++i));
            }
        }
    }
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Examples of org.openscience.cdk.interfaces.IReactionSet.reactions()

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                totalBounds = moleculeSetBounds;
            }
           
            this.setupTransformNatural(totalBounds);
            ElementGroup diagram = new ElementGroup();
            for (IReaction reaction : reactionSet.reactions()) {
                diagram.add(this.generateDiagram(reaction));
            }
            diagram.add(this.generateDiagram(moleculeSet));
            diagram.add(this.generateDiagram(reactionSet));
            this.paint(drawVisitor, diagram);
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