List of rapidParseInt() Examples

Examples of rapidParseInt()

picard.sam.markduplicates.util.OpticalDuplicateFinder.rapidParseInt()
Very specialized method to rapidly parse a sequence of digits from a String up until the first non-digit character.

Examples of picard.sam.markduplicates.util.OpticalDuplicateFinder.rapidParseInt()

    /** Tests rapidParseInt for positive and negative numbers, as well as non-digit suffixes */
    @Test
    public void testRapidParseInt() {
        final OpticalDuplicateFinder opticalDuplicateFinder = new OpticalDuplicateFinder();
        for (int i = -100; i < 100; i++) {
            Assert.assertEquals(opticalDuplicateFinder.rapidParseInt(Integer.toString(i)), i);


            // trailing characters
            Assert.assertEquals(opticalDuplicateFinder.rapidParseInt(Integer.toString(i)+"A"), i);
            Assert.assertEquals(opticalDuplicateFinder.rapidParseInt(Integer.toString(i)+"ACGT"), i);
            Assert.assertEquals(opticalDuplicateFinder.rapidParseInt(Integer.toString(i)+".1"), i);

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Examples of picard.sam.markduplicates.util.OpticalDuplicateFinder.rapidParseInt()

        final OpticalDuplicateFinder opticalDuplicateFinder = new OpticalDuplicateFinder();
        for (int i = -100; i < 100; i++) {
            Assert.assertEquals(opticalDuplicateFinder.rapidParseInt(Integer.toString(i)), i);


            // trailing characters
            Assert.assertEquals(opticalDuplicateFinder.rapidParseInt(Integer.toString(i)+"A"), i);
            Assert.assertEquals(opticalDuplicateFinder.rapidParseInt(Integer.toString(i)+"ACGT"), i);
            Assert.assertEquals(opticalDuplicateFinder.rapidParseInt(Integer.toString(i)+".1"), i);
        }
    }

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Examples of picard.sam.markduplicates.util.OpticalDuplicateFinder.rapidParseInt()

        for (int i = -100; i < 100; i++) {
            Assert.assertEquals(opticalDuplicateFinder.rapidParseInt(Integer.toString(i)), i);


            // trailing characters
            Assert.assertEquals(opticalDuplicateFinder.rapidParseInt(Integer.toString(i)+"A"), i);
            Assert.assertEquals(opticalDuplicateFinder.rapidParseInt(Integer.toString(i)+"ACGT"), i);
            Assert.assertEquals(opticalDuplicateFinder.rapidParseInt(Integer.toString(i)+".1"), i);
        }
    }


    /** Helper for testGetRapidDefaultReadNameRegexSplit */

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Examples of picard.sam.markduplicates.util.OpticalDuplicateFinder.rapidParseInt()

            Assert.assertEquals(opticalDuplicateFinder.rapidParseInt(Integer.toString(i)), i);


            // trailing characters
            Assert.assertEquals(opticalDuplicateFinder.rapidParseInt(Integer.toString(i)+"A"), i);
            Assert.assertEquals(opticalDuplicateFinder.rapidParseInt(Integer.toString(i)+"ACGT"), i);
            Assert.assertEquals(opticalDuplicateFinder.rapidParseInt(Integer.toString(i)+".1"), i);
        }
    }


    /** Helper for testGetRapidDefaultReadNameRegexSplit */
    private void doTestGetRapidDefaultReadNameRegexSplit(int numFields, final OpticalDuplicateFinder opticalDuplicateFinder) {

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