Examples of randomSequence()

Examples of bgu.bio.util.alphabet.AlphabetUtils.randomSequence()

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    final int repeats = 1000;
    char[] seq1 = new char[size];
    char[] seq2 = new char[size];
    for (int i = 0; i < repeats; i++) {

      alphabet.randomSequence(seq1, size, rand);
      alphabet.randomSequence(seq2, size, rand);

      alignMat.setSequences(new String(seq1), new String(seq2));
      alignNoMat.setSequences(seq1, seq2);
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Examples of bgu.bio.util.alphabet.AlphabetUtils.randomSequence()

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    char[] seq1 = new char[size];
    char[] seq2 = new char[size];
    for (int i = 0; i < repeats; i++) {

      alphabet.randomSequence(seq1, size, rand);
      alphabet.randomSequence(seq2, size, rand);

      alignMat.setSequences(new String(seq1), new String(seq2));
      alignNoMat.setSequences(seq1, seq2);

      alignMat.buildMatrix();
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Examples of bgu.bio.util.alphabet.AlphabetUtils.randomSequence()

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    final int repeats = 12000;
    char[] seq1 = new char[size];
    char[] seq2 = new char[size / 2];
    for (int i = 0; i < repeats; i++) {

      alphabet.randomSequence(seq1, size, rand);
      alphabet.randomSequence(seq2, size / 2, rand);

      alignMat.setSequences(new String(seq1), new String(seq2));
      alignNoMat.setSequences(seq1, seq2);
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Examples of bgu.bio.util.alphabet.AlphabetUtils.randomSequence()

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    char[] seq1 = new char[size];
    char[] seq2 = new char[size / 2];
    for (int i = 0; i < repeats; i++) {

      alphabet.randomSequence(seq1, size, rand);
      alphabet.randomSequence(seq2, size / 2, rand);

      alignMat.setSequences(new String(seq1), new String(seq2));
      alignNoMat.setSequences(seq1, seq2);

      alignMat.buildMatrix();
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