Examples of perform()


Examples of stallone.api.cluster.IClustering.perform()

        names.add("/Users/noe/data/open_projects/adaptive_sampling_local/data/TrypsinBenzamidine/new_model_test/model/tics/long3.dat");
        IDataSequenceLoader loader = dataNew.multiSequenceLoader(names);
        loader.scan();
       
        IClustering clustering = clusterNew.regspace(loader, 0.5);
        clustering.perform();
       
        /*
        IDiscretization assign = clustering.getClusterAssignment();

        System.out.println("number of clusters: "+clustering.getNumberOfClusters());
View Full Code Here

Examples of stallone.graph.connectivity.IntStrongConnectivity.perform()

    private void calculateComponents()
    {
        IIntGraph g = new MatrixIntGraph(T);
        IntStrongConnectivity connectivity = new IntStrongConnectivity(g);
        connectivity.perform();

        List<IIntArray> C = connectivity.getStrongComponents();
//        int[][] C = g.BFS_mult();

        IIntArray complengths = Ints.create.array(C.size());
View Full Code Here

Examples of stallone.mc.pcca.PCCA.perform()

                throw(new IllegalArgumentException("Attempting to create PCCA decomposition into "+nstates+" states."+
                                                    "but only "+evec.columns()+" eigenvectors were provided"));
        }

        pcca.setEigenvectors(evec);
        pcca.perform();

        return(pcca);
    }

    public ICommittor createCommittor(IDoubleArray T, IIntArray A, IIntArray B)
View Full Code Here
TOP
Copyright © 2018 www.massapi.com. All rights reserved.
All source code are property of their respective owners. Java is a trademark of Sun Microsystems, Inc and owned by ORACLE Inc. Contact coftware#gmail.com.