Package org.obolibrary.oboformat.model

Examples of org.obolibrary.oboformat.model.Clause.addValue()

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    @Nonnull
    protected Clause createRelationshipClauseWithRestrictions(
            @Nonnull OWLQuantifiedObjectRestriction r, String fillerId,
            @Nonnull Set<QualifierValue> qvs, @Nonnull OWLSubClassOfAxiom ax) {
        Clause c = new Clause(OboFormatTag.TAG_RELATIONSHIP.getTag());
        c.addValue(getIdentifier(r.getProperty()));
        c.addValue(fillerId);
        c.setQualifierValues(qvs);
        addQualifiers(c, ax.getAnnotations());
        return c;
    }
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    protected Clause createRelationshipClauseWithRestrictions(
            @Nonnull OWLQuantifiedObjectRestriction r, String fillerId,
            @Nonnull Set<QualifierValue> qvs, @Nonnull OWLSubClassOfAxiom ax) {
        Clause c = new Clause(OboFormatTag.TAG_RELATIONSHIP.getTag());
        c.addValue(getIdentifier(r.getProperty()));
        c.addValue(fillerId);
        c.setQualifierValues(qvs);
        addQualifiers(c, ax.getAnnotations());
        return c;
    }
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    protected Clause createRelationshipClauseWithCardinality(
            @Nonnull OWLObjectCardinalityRestriction restriction,
            String fillerId, @Nonnull Set<QualifierValue> qvs,
            @Nonnull OWLSubClassOfAxiom ax) {
        Clause c = new Clause(OboFormatTag.TAG_RELATIONSHIP.getTag());
        c.addValue(getIdentifier(restriction.getProperty()));
        c.addValue(fillerId);
        c.setQualifierValues(qvs);
        String q = "cardinality";
        if (restriction instanceof OWLObjectMinCardinality) {
            q = "minCardinality";
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            @Nonnull OWLObjectCardinalityRestriction restriction,
            String fillerId, @Nonnull Set<QualifierValue> qvs,
            @Nonnull OWLSubClassOfAxiom ax) {
        Clause c = new Clause(OboFormatTag.TAG_RELATIONSHIP.getTag());
        c.addValue(getIdentifier(restriction.getProperty()));
        c.addValue(fillerId);
        c.setQualifierValues(qvs);
        String q = "cardinality";
        if (restriction instanceof OWLObjectMinCardinality) {
            q = "minCardinality";
        } else if (restriction instanceof OWLObjectMaxCardinality) {
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    }

    @Nonnull
    private static String writeObsolete(Object value) throws Exception {
        Clause cl = new Clause(OboFormatTag.TAG_IS_OBSELETE);
        cl.addValue(value);
        StringWriter out = new StringWriter();
        BufferedWriter bufferedWriter = new BufferedWriter(out);
        OBOFormatWriter.write(cl, bufferedWriter, null);
        bufferedWriter.close();
        return out.toString().trim();
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    }

    private static void addPropertyValue(@Nonnull Frame frame, String v1,
            String v2, @Nullable String v3) {
        Clause cl = new Clause(OboFormatTag.TAG_PROPERTY_VALUE);
        cl.addValue(v1);
        cl.addValue(v2);
        if (v3 != null) {
            cl.addValue(v3);
        }
        frame.addClause(cl);
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    private static void addPropertyValue(@Nonnull Frame frame, String v1,
            String v2, @Nullable String v3) {
        Clause cl = new Clause(OboFormatTag.TAG_PROPERTY_VALUE);
        cl.addValue(v1);
        cl.addValue(v2);
        if (v3 != null) {
            cl.addValue(v3);
        }
        frame.addClause(cl);
    }
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            String v2, @Nullable String v3) {
        Clause cl = new Clause(OboFormatTag.TAG_PROPERTY_VALUE);
        cl.addValue(v1);
        cl.addValue(v2);
        if (v3 != null) {
            cl.addValue(v3);
        }
        frame.addClause(cl);
    }
}
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