XQueryService xqs = (XQueryService) rootCollection.getService("XQueryService", "1.0");
Source query = new FileSource(new File("test/src/xquery/runTests.xql"), "UTF-8", false);
for (File file : files) {
Document doc = parse(file);
xqs.declareVariable("doc", doc);
xqs.declareVariable("id", Sequence.EMPTY_SEQUENCE);
ResourceSet result = xqs.execute(query);
XMLResource resource = (XMLResource) result.getResource(0);
results.append(resource.getContent()).append(EOL);
Element root = (Element) resource.getContentAsDOM();