Package net.sourceforge.align.filter.aligner

Examples of net.sourceforge.align.filter.aligner.Aligner.apply()

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    AlignAlgorithm algorithm =
      new AdaptiveBandAlgorithm(algorithmFactory, calculator);
   
    Filter filter = new Aligner(algorithm);
   
    return filter.apply(alignmentList);

  }

}
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    AlignAlgorithm algorithm =
      new AdaptiveBandAlgorithm(algorithmFactory, calculator);

    Filter filter = new Aligner(algorithm);
   
    return filter.apply(alignmentList);
    
  }
 
}
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    AlignAlgorithm algorithm =
      new AdaptiveBandAlgorithm(algorithmFactory, calculator);

    Filter filter = new Aligner(algorithm);
   
    return filter.apply(alignmentList);
    
  }
 
}
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    AlignAlgorithm algorithm =
      new AdaptiveBandAlgorithm(algorithmFactory, calculator);
   
    Filter filter = new Aligner(algorithm);
   
    return filter.apply(alignmentList);

  }

}
View Full Code Here
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    AlignAlgorithm algorithm =
      new AdaptiveBandAlgorithm(algorithmFactory, calculator);
   
    Filter filter = new Aligner(algorithm); 
   
    return filter.apply(alignmentList);
  }

  /**
   * Selects only {@link #SELECT_FRACTION} one-to-one alignments from the
   * result.
 
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    AlignAlgorithm algorithm =
      new AdaptiveBandAlgorithm(algorithmFactory, calculator);

    Filter filter = new Aligner(algorithm);
   
    return filter.apply(alignmentList);
    
  }
 
  /**
   * Unifies alignments from alignment list with reference alignment list.
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