Package net.sourceforge.align.filter.aligner

Examples of net.sourceforge.align.filter.aligner.Aligner

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      new ForwardBackwardAlgorithmFactory();
   
    AlignAlgorithm algorithm =
      new AdaptiveBandAlgorithm(algorithmFactory, calculator);
   
    Filter filter = new Aligner(algorithm);
   
    return filter.apply(alignmentList);

  }
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      new ForwardBackwardAlgorithmFactory();
   
    AlignAlgorithm algorithm =
      new AdaptiveBandAlgorithm(algorithmFactory, calculator);
   
    filterList.add(new Aligner(algorithm));
   
    filterList.add(new OneToOneSelector());
   
    filterList.add(new FractionSelector(SELECT_FRACTION));
   
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      new ForwardBackwardAlgorithmFactory();
   
    AlignAlgorithm algorithm =
      new AdaptiveBandAlgorithm(algorithmFactory, calculator);

    Filter filter = new Aligner(algorithm);
   
    return filter.apply(alignmentList);
    
  }
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      new ForwardBackwardAlgorithmFactory();
   
    AlignAlgorithm algorithm =
      new AdaptiveBandAlgorithm(algorithmFactory, calculator);
   
    filterList.add(new Aligner(algorithm));
   
    filterList.add(new OneToOneSelector());
   
    filterList.add(new FractionSelector(SELECT_FRACTION));
   
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      new ForwardBackwardAlgorithmFactory();
   
    AlignAlgorithm algorithm =
      new AdaptiveBandAlgorithm(algorithmFactory, calculator);

    Filter filter = new Aligner(algorithm);
   
    return filter.apply(alignmentList);
    
  }
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      new ViterbiAlgorithmFactory();
   
    AlignAlgorithm algorithm =
      new AdaptiveBandAlgorithm(algorithmFactory, calculator);
   
    Filter filter = new Aligner(algorithm);
   
    return filter.apply(alignmentList);

  }
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      new ForwardBackwardAlgorithmFactory();
   
    AlignAlgorithm algorithm =
      new AdaptiveBandAlgorithm(algorithmFactory, calculator);
   
    Filter filter = new Aligner(algorithm); 
   
    return filter.apply(alignmentList);
  }
View Full Code Here
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      new ForwardBackwardAlgorithmFactory();
   
    AlignAlgorithm algorithm =
      new AdaptiveBandAlgorithm(algorithmFactory, calculator);

    Filter filter = new Aligner(algorithm);
   
    return filter.apply(alignmentList);
    
  }
View Full Code Here
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    SplitAlgorithm splitAlgorithm = new SplitAlgorithmMock(1);
    AlignAlgorithm alignAlgorithm = new AlignAlgorithmMock(2);
    MergeAlgorithm mergeAlgorithm = new SeparatorMergeAlgorithm();
    List<Filter> filterList = new ArrayList<Filter>();
    filterList.add(new Modifier(splitAlgorithm, splitAlgorithm));
    filterList.add(new Aligner(alignAlgorithm));
    filterList.add(new Modifier(mergeAlgorithm, mergeAlgorithm));
    CompositeFilter composite = new CompositeFilter(filterList);
    List<Alignment> alignmentList = createAlignmentList(
        SOURCE_SEGMENT_ARRAY, TARGET_SEGMENT_ARRAY);
    List<Alignment> resultAlignmentList = composite.apply(alignmentList);
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   * Tests whether alignments with infinite score are ignored and
   * the ones without are not by using {@link OneToOneAlgorithm} aligner.
   */
  @Test
  public void testIgnoreInfiniteProbability() {
    Filter oneToOneAligner = new Aligner(new OneToOneAlgorithm());
    Filter filter =
      new IgnoreInfiniteProbabilityAlignmentsFilterDecorator(oneToOneAligner);

    List<Alignment> alignmentList = createAlignmentList(
        SOURCE_SEGMENT_ARRAY, TARGET_SEGMENT_ARRAY);
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Related Classes of net.sourceforge.align.filter.aligner.Aligner

  • net.sourceforge.align.filter.macro.GaleAndChurchMacro
  • net.sourceforge.align.filter.macro.MooreMacro
  • net.sourceforge.align.filter.macro.PoissonMacro
  • net.sourceforge.align.filter.macro.PoissonTranslationMacro
  • net.sourceforge.align.filter.macro.TranslationMacro
  • net.sourceforge.align.filter.meta.CompositeFilterTest
  • net.sourceforge.align.filter.meta.IgnoreInfiniteProbabilityAlignmentsFilterDecoratorTest
  • net.sourceforge.align.ui.console.command.AlignCommand
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