List of loadOntologyFromOntologyDocument() Examples

Examples of loadOntologyFromOntologyDocument()

org.semanticweb.owlapi.model.OWLOntologyManager.loadOntologyFromOntologyDocument()
Loads an ontology from an ontology document specified by an IRI. In contrast the the {@link #loadOntology(IRI)} method, no mapping isperformed on the specified IRI. @param documentIRI The ontology document IRI where the ontology will be loaded from. @return The ontology that was loaded. @throws OWLOntologyCreationException If there was a problem in creating and loading the ontology. @throws org.semanticweb.owlapi.io.UnparsableOntologyException if the ontology was being parsed from a document and the document contained syntax errors. @throws UnloadableImportException if the ontology imports ontologies and one of the imports could not be loaded for what ever reason. If the {@link MissingImportHandlingStrategy} is set to{@link MissingImportHandlingStrategy#SILENT} then this exceptionwill not be thrown. The {@code UnloadableImportException}contains information about the import declaration that triggered the import and the cause of this exception is an {@code OWLOntologyCreationException} which contains informationabout why the import could not be loaded. @throws org.semanticweb.owlapi.io.OWLOntologyCreationIOException if there was an {@code IOException} when trying to load theontology. @throws OWLOntologyDocumentAlreadyExistsException if the specified {@code documentIRI} is already the document IRIfor a loaded ontology. @throws OWLOntologyAlreadyExistsException if the manager already contains an ontology whose ontology IRI and version IRI is the same as the ontology IRI and version IRI of the ontology contained in the document pointed to by {@code documentIRI}.

Examples of org.semanticweb.owlapi.model.OWLOntologyManager.loadOntologyFromOntologyDocument()

    @Test
    public void testConvert() throws Exception {
        OWLOntologyManager manager = OWLManager.createOWLOntologyManager();
        String input = "Prefix(:=<http://www.example.org/#>)\nOntology(<http://example.org/>\nSubClassOf(:a :b) )";
        StringDocumentSource source = new StringDocumentSource(input);
        OWLOntology origOnt = manager.loadOntologyFromOntologyDocument(source);
        assertNotNull(origOnt);
        assertEquals(1, manager.getOntologies().size());
        assertFalse(origOnt.getOntologyID().getVersionIRI().isPresent());
        assertTrue(origOnt.getAxiomCount() > 0);
        Optional<IRI> ontologyIRI = origOnt.getOntologyID().getOntologyIRI();

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Examples of org.semanticweb.owlapi.model.OWLOntologyManager.loadOntologyFromOntologyDocument()

        // remove the ontology from the manager, so it can be loaded again
        m.removeOntology(o);
        // create a document source from a string
        StringDocumentSource documentSource = new StringDocumentSource(target);
        // load the ontology from a document source
        OWLOntology o2 = m.loadOntologyFromOntologyDocument(documentSource);
        assertNotNull(o2);
    }


    @Test
    public void testOntologyCreation() throws OWLException {

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Examples of org.semanticweb.owlapi.model.OWLOntologyManager.loadOntologyFromOntologyDocument()


    @Test
    public void testrun() throws Exception {
        OWLOntologyManager m = OWLManager.createOWLOntologyManager();
        m.getIRIMappers().add(new AutoIRIMapper(new File("."), false));
        OWLOntology o = m.loadOntologyFromOntologyDocument(getClass()
                .getResourceAsStream("/pizza.owl"));
        m.addAxiom(o, DF.getOWLDeclarationAxiom(DF.getOWLClass(iri)));
        m.addAxiom(
                o,
                DF.getOWLSubClassOfAxiom(c,

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Examples of org.semanticweb.owlapi.model.OWLOntologyManager.loadOntologyFromOntologyDocument()

        OWLOntology ont = man.createOntology();
        man.addAxiom(ont, rule);
        StringDocumentTarget documentTarget = new StringDocumentTarget();
        man.saveOntology(ont, ontologyFormat, documentTarget);
        OWLOntologyManager man2 = OWLManager.createOWLOntologyManager();
        OWLOntology ont2 = man2
                .loadOntologyFromOntologyDocument(new StringDocumentSource(
                        documentTarget.toString(),
                        OWLOntologyDocumentSourceBase
                                .getNextDocumentIRI("string:ontology"),
                        ontologyFormat, null));

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Examples of org.semanticweb.owlapi.model.OWLOntologyManager.loadOntologyFromOntologyDocument()

    @Nonnull
    protected OWLOntology parseOWLFile(String fn)
            throws OWLOntologyCreationException {
        OWLOntologyManager manager = OWLManager.createOWLOntologyManager();
        // TODO replace
        return manager.loadOntologyFromOntologyDocument(getInputStream(fn));
    }


    @Nonnull
    protected OWLOntology convert(OBODoc obodoc) {
        OWLAPIObo2Owl bridge = new OWLAPIObo2Owl(

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Examples of org.semanticweb.owlapi.model.OWLOntologyManager.loadOntologyFromOntologyDocument()

        @Nonnull
        String x = args[0];
        System.out.println(x);
        IRI documentIRI = IRI.create(x);
        // Now load the ontology.
        OWLOntology ontology = manager
                .loadOntologyFromOntologyDocument(documentIRI);
        // Report information about the ontology
        System.out.println("Ontology Loaded...");
        System.out.println("Document IRI: " + documentIRI);
        System.out.println("Ontology : " + ontology.getOntologyID());

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Examples of org.semanticweb.owlapi.model.OWLOntologyManager.loadOntologyFromOntologyDocument()

        OWLOntologyLoaderConfiguration config = new OWLOntologyLoaderConfiguration()
                .setStrict(false);
        @SuppressWarnings("resource")
        InputStream in = getClass().getResourceAsStream(CIDOC_FILE);
        assertNotNull("can't find CIDOC_FILE", in);
        cidocOntology = manager.loadOntologyFromOntologyDocument(
                new StreamDocumentSource(in), config);
        assertNotNull(cidocOntology);
        OWLDocumentFormat format = manager.getOntologyFormat(cidocOntology);
        assertNotNull(format);
        assertTrue(format.isPrefixOWLOntologyFormat());

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Examples of org.semanticweb.owlapi.model.OWLOntologyManager.loadOntologyFromOntologyDocument()

        File savedLocation2 = folder.newFile("testont2A.owl");
        FileOutputStream out2 = new FileOutputStream(savedLocation2);
        StreamDocumentTarget writer2 = new StreamDocumentTarget(out2);
        ont2.getOWLOntologyManager().saveOntology(ont2, format, writer2);
        OWLOntologyManager man = OWLManager.createOWLOntologyManager();
        OWLOntology ont1L = man
                .loadOntologyFromOntologyDocument(savedLocation1);
        OWLOntology ont2L = man
                .loadOntologyFromOntologyDocument(savedLocation2);
        // annoProp is in ont1 and in the import closure of ont2
        assertTrue(containsConsiderEx(ont1L, axannoPropdecl));

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Examples of org.semanticweb.owlapi.model.OWLOntologyManager.loadOntologyFromOntologyDocument()

        StreamDocumentTarget writer2 = new StreamDocumentTarget(out2);
        ont2.getOWLOntologyManager().saveOntology(ont2, format, writer2);
        OWLOntologyManager man = OWLManager.createOWLOntologyManager();
        OWLOntology ont1L = man
                .loadOntologyFromOntologyDocument(savedLocation1);
        OWLOntology ont2L = man
                .loadOntologyFromOntologyDocument(savedLocation2);
        // annoProp is in ont1 and in the import closure of ont2
        assertTrue(containsConsiderEx(ont1L, axannoPropdecl));
        assertFalse(containsConsiderEx(ont2L, axannoPropdecl));
        assertTrue(containsConsider(ont2L, axannoPropdecl));

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Examples of org.semanticweb.owlapi.model.OWLOntologyManager.loadOntologyFromOntologyDocument()

        FileOutputStream out2 = new FileOutputStream(savedLocation2);
        StreamDocumentTarget writer2 = new StreamDocumentTarget(out2);
        ont2.getOWLOntologyManager().saveOntology(ont2, format, writer2);
        OWLOntologyManager man = OWLManager.createOWLOntologyManager();
        @SuppressWarnings("unused")
        OWLOntology ont1L = man
                .loadOntologyFromOntologyDocument(savedLocation1);
        OWLOntology ont2L = man
                .loadOntologyFromOntologyDocument(savedLocation2);
        for (OWLOntology importedOntology : ont2L.getImports()) {
            for (OWLAxiom importedAxiom : importedOntology.getAxioms()) {

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