List of lnProbability() Examples

Examples of lnProbability()

be.ac.ulg.montefiore.run.jahmm.ViterbiCalculator.lnProbability()
Returns the neperian logarithm of the probability of the given observation sequence on the most likely state sequence of the given HMM. @return ln(P[O,S|H]) where O is the givenobservation sequence, H the given HMM and S the most likely state sequence of this observation sequence given this HMM.

Examples of be.ac.ulg.montefiore.run.jahmm.ViterbiCalculator.lnProbability()

   * @return The log probability of that sequence
   */
  public double viterbiCalculate(ArrayList<String> seq) {
    ArrayList<ObservationInteger> oSeq = taxo.obSeqWithBoundarySymbols(seq);
    ViterbiCalculator vc = new ViterbiCalculator(oSeq, this);
    return vc.lnProbability();
  }


  /**
   * Computes the log probability of a sequence assuming that emission probabilities for different
   * states never overlap.

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