//configReader.displayConfiguration(configMap);
//run main application
MotifX motifX = new MotifX(configMap);
LinkedList<MotifXElucidatedMotif> elucidatedMotifs = motifX.getMotifsElucidated();
motifX.printMotifElucidationSummary(elucidatedMotifs, configMap.get("outputDirectoryPath") + File.separator + "JMotifX.summary");
System.out.println("...Done!");
}