Package jmotifx.motifx

Examples of jmotifx.motifx.MotifX


        JMotifXConfigFileReader configReader = new JMotifXConfigFileReader();
        HashMap<String,String> configMap = configReader.readApplicationConfiguration("./JMotifX.config");
        //configReader.displayConfiguration(configMap);
       
        //run main application
        MotifX motifX = new MotifX(configMap);
        LinkedList<MotifXElucidatedMotif> elucidatedMotifs  = motifX.getMotifsElucidated();
        motifX.printMotifElucidationSummary(elucidatedMotifs, configMap.get("outputDirectoryPath") + File.separator + "JMotifX.summary");
       
       
        System.out.println("...Done!");
       
    }
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Related Classes of jmotifx.motifx.MotifX

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