Package javax.vecmath

Examples of javax.vecmath.Point3f.distanceSquared()

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                              AminoMonomer target, boolean checkDistances) {
    Point3f targetOxygenPoint = target.getCarbonylOxygenAtom();

    if (targetOxygenPoint == null)
      return 0;
    float distON2 = targetOxygenPoint.distanceSquared(nitrogenPoint);
    if (distON2 < minimumHbondDistance2)
      return 0;

    float distOH2 = targetOxygenPoint.distanceSquared(hydrogenPoint);
    if (distOH2 < minimumHbondDistance2)
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      return 0;
    float distON2 = targetOxygenPoint.distanceSquared(nitrogenPoint);
    if (distON2 < minimumHbondDistance2)
      return 0;

    float distOH2 = targetOxygenPoint.distanceSquared(hydrogenPoint);
    if (distOH2 < minimumHbondDistance2)
      return 0;

    Point3f targetCarbonPoint = target.getCarbonylCarbonAtom();
    float distCH2 = targetCarbonPoint.distanceSquared(hydrogenPoint);
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    float distOH2 = targetOxygenPoint.distanceSquared(hydrogenPoint);
    if (distOH2 < minimumHbondDistance2)
      return 0;

    Point3f targetCarbonPoint = target.getCarbonylCarbonAtom();
    float distCH2 = targetCarbonPoint.distanceSquared(hydrogenPoint);
    if (distCH2 < minimumHbondDistance2)
      return 0;

    float distCN2 = targetCarbonPoint.distanceSquared(nitrogenPoint);
    if (distCN2 < minimumHbondDistance2)
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    Point3f targetCarbonPoint = target.getCarbonylCarbonAtom();
    float distCH2 = targetCarbonPoint.distanceSquared(hydrogenPoint);
    if (distCH2 < minimumHbondDistance2)
      return 0;

    float distCN2 = targetCarbonPoint.distanceSquared(nitrogenPoint);
    if (distCN2 < minimumHbondDistance2)
      return 0;

    double distOH = Math.sqrt(distOH2);
    double distCH = Math.sqrt(distCH2);
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           */
          float minDist2 = Float.MAX_VALUE;
          if (checkSymmetryRange && !isInSymmetryRange(cartesian))
            continue;
          for (int j = pt0; --j >= 0;) {
            float d2 = cartesian.distanceSquared(cartesians[j]);
            if (checkSpecial && d2 < 0.0001) {
              special = atoms[iAtomFirst + j];
              break;
            }
            if (checkRange111 && j < baseCount && d2 < minDist2)
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